Evidence map›Paper›PMID 34848790›Full record

ArticleScientific reports2021

Combined transcriptome and metabolome integrated analysis of Acer mandshuricum to reveal candidate genes involved in anthocyanin accumulation.

Shikai Zhang, Wang Zhan, Anran Sun, Ying Xie, Zhiming Han, Xibin Qu, Jiayi Wang, Laifu Zhang, Mingshun Tian, Xuhong Pang and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 30 citations in OpenAlex.

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  10. Chromosome-Level Genome Assembly forFrontiers in plant science · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Shikai ZhangState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.
Wang ZhanBaishishan Forestry Bureau, Jiaohe, 132500, China.
Anran SunState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.
Ying XieState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.
Zhiming HanState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.
Xibin QuBaishishan Forestry Bureau, Jiaohe, 132500, China.
Jiayi WangBaishishan Forestry Bureau, Jiaohe, 132500, China.
Laifu ZhangBaishishan Forestry Bureau, Jiaohe, 132500, China.
Mingshun TianBaishishan Forestry Bureau, Jiaohe, 132500, China.
Xuhong PangBaishishan Forestry Bureau, Jiaohe, 132500, China.
Jinbao ZhangBaishishan Forestry Bureau, Jiaohe, 132500, China.
Xiyang ZhaoState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China. zhaoxyphd@163.com.
Experimental Center of Forestry in North China · CNNortheast Forestry University · CNJilin Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The red color formation of Acer mandshuricum leaves is caused by the accumulation of anthocyanins primarily, but the molecular mechanism researches which underlie anthocyanin biosynthesis in A. mandshuricum were still lacking. Therefore, we combined the transcriptome and metabolome and analyzed the regulatory mechanism and accumulation pattern of anthocyanins in three different leaf color states. In our results, 26 anthocyanins were identified. Notably, the metabolite cyanidin 3-O-glucoside was found that significantly correlated with the color formation, was the predominant metabolite in anthocyanin biosynthesis of A. mandshuricum. By the way, two key structural genes ANS (Cluster-20561.86285) and BZ1 (Cluster-20561.99238) in anthocyanidin biosynthesis pathway were significantly up-regulated in RL, suggesting that they might enhance accumulation of cyanidin 3-O-glucoside which is their downstream metabolite, and contributed the red formation of A. mandshuricum leaves. Additionally, most TFs (e.g., MYBs, bZIPs and bHLHs) were detected differentially expressed in three leaf color stages that could participate in anthocyanin accumulation. This study sheds light on the anthocyanin molecular regulation of anthocyanidin biosynthesis and accumulation underlying the different leaf color change periods in A. mandshuricum, and it could provide basic theory and new insight for the leaf color related genetic improvement of A. mandshuricum.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantMetabolomeTranscriptomeAcerAnthocyaninsBiosynthetic PathwaysCluster AnalysisComputational BiologyFlavonoidsKineticsMetabolomicsModels, GeneticMolecular BiologyPhenotypePigmentationAnthocyaninscyanidin-3-O-beta-glucopyranosideFlavonoidsPlant Proteins

Identifiers

PMID34848790
PMCPMC8633053
OpenAlexW3194421260

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.