Evidence map›Paper›PMID 34848707›Full record

ArticleNature communications2021

Crystal structures of phosphatidyl serine synthase PSS reveal the catalytic mechanism of CDP-DAG alcohol O-phosphatidyl transferases.

Martin Centola, Katharina van Pee, Heidi Betz, Özkan Yildiz

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Article
  6. Article
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  8. PLD3 and PLD4 synthesizebioRxiv : the preprint server for biology · 2024
    Article
  9. Review
  10. Review
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  14. Mapping the Substrate-Binding Sites in the Phosphatidylserine Synthase inFrontiers in cellular and infection microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Martin CentolaDepartment of Structural Biology, Max Planck Institute of Biophysics, Max von Laue Strasse 3, 60438, Frankfurt am Main, Germany.ORCID http://orcid.org/0000-0003-0956-5705
Katharina van PeeDepartment of Structural Biology, Max Planck Institute of Biophysics, Max von Laue Strasse 3, 60438, Frankfurt am Main, Germany.
Heidi BetzDepartment of Structural Biology, Max Planck Institute of Biophysics, Max von Laue Strasse 3, 60438, Frankfurt am Main, Germany.
Özkan YildizDepartment of Structural Biology, Max Planck Institute of Biophysics, Max von Laue Strasse 3, 60438, Frankfurt am Main, Germany. Oezkan.Yildiz@biophys.mpg.de.ORCID http://orcid.org/0000-0003-3659-2805
Max Planck Institute of Biophysics · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phospholipids are the major components of the membrane in all type of cells and organelles. They also are critical for cell metabolism, signal transduction, the immune system and other critical cell functions. The biosynthesis of phospholipids is a complex multi-step process with high-energy intermediates. Several enzymes in different metabolic pathways are involved in the initial phospholipid synthesis and its subsequent conversion. While the "Kennedy pathway" is the main pathway in mammalian cells, in bacteria and lower eukaryotes the precursor CDP-DAG is used in the de novo pathway by CDP-DAG alcohol O-phosphatidyl transferases to synthetize the basic lipids. Here we present the high-resolution structures of phosphatidyl serine synthase from Methanocaldococcus jannaschii crystallized in four different states. Detailed structural and functional analysis of the different structures allowed us to identify the substrate binding site and show how CDP-DAG, serine and two essential metal ions are bound and oriented relative to each other. In close proximity to the substrate binding site, two anions were identified that appear to be highly important for the reaction. The structural findings were confirmed by functional activity assays and suggest a model for the catalytic mechanism of CDP-DAG alcohol O-phosphatidyl transferases, which synthetize the phospholipids essential for the cells.

Indexed as

Binding SitesCDPdiacylglycerol-Serine O-PhosphatidyltransferaseCrystallography, X-RayCytidine DiphosphateEscherichia coliMembrane LipidsMethanocaldococcusPhosphatidylserinesPhospholipidsPhosphotransferasesTransferasesCDPdiacylglycerol-Serine O-PhosphatidyltransferaseCytidine DiphosphateMembrane LipidsPhosphatidylserinesPhospholipidsPhosphotransferasesTransferases

Identifiers

PMID34848707
PMCPMC8633023
OpenAlexW3216692635

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.