Evidence map›Paper›PMID 34848541›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Structural basis for substrate specificity of heteromeric transporters of neutral amino acids.

Carlos F Rodriguez, Paloma Escudero-Bravo, Lucía Díaz, Paola Bartoccioni, Carmen García-Martín, Joan G Gilabert, Jasminka Boskovic, Víctor Guallar, Ekaitz Errasti-Murugarren, Oscar Llorca and 1 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Carlos F RodriguezStructural Biology Programme, Spanish National Cancer Research Centre, E-28029 Madrid, Spain.ORCID 0000-0001-9166-0132
Paloma Escudero-BravoInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), 08028 Barcelona, Spain.
Lucía DíazNostrum Biodiscovery, E-08028 Barcelona, Spain.ORCID 0000-0001-8850-2571
Paola BartoccioniInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), 08028 Barcelona, Spain.
Carmen García-MartínStructural Biology Programme, Spanish National Cancer Research Centre, E-28029 Madrid, Spain.ORCID 0000-0003-4132-9307
Joan G GilabertElectronic and atomic protein modelling group, Barcelona Supercomputing Center, E-08034 Barcelona, Spain.
Jasminka BoskovicStructural Biology Programme, Spanish National Cancer Research Centre, E-28029 Madrid, Spain.
Víctor GuallarElectronic and atomic protein modelling group, Barcelona Supercomputing Center, E-08034 Barcelona, Spain.
Ekaitz Errasti-MurugarrenInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), 08028 Barcelona, Spain; ekaitz.errasti@irbbarcelona.org ollorca@cnio.es manuel.palacin@irbbarcelona.org.
Oscar LlorcaStructural Biology Programme, Spanish National Cancer Research Centre, E-28029 Madrid, Spain; ekaitz.errasti@irbbarcelona.org ollorca@cnio.es manuel.palacin@irbbarcelona.org.ORCID 0000-0001-5705-0699
Manuel PalacínInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology (BIST), 08028 Barcelona, Spain; ekaitz.errasti@irbbarcelona.org ollorca@cnio.es manuel.palacin@irbbarcelona.org.
Spanish National Cancer Research Centre · ESCentre for Biomedical Network Research on Rare Diseases · ESInstitute for Research in Biomedicine · ESBarcelona Supercomputing Center · ESInstitució Catalana de Recerca i Estudis Avançats · ES

Funding

Biotechnology and Biological Sciences Research CouncilMedical Research CouncilWellcome Trust
6 · The paper itself

Abstract

Despite having similar structures, each member of the heteromeric amino acid transporter (HAT) family shows exquisite preference for the exchange of certain amino acids. Substrate specificity determines the physiological function of each HAT and their role in human diseases. However, HAT transport preference for some amino acids over others is not yet fully understood. Using cryo-electron microscopy of apo human LAT2/CD98hc and a multidisciplinary approach, we elucidate key molecular determinants governing neutral amino acid specificity in HATs. A few residues in the substrate-binding pocket determine substrate preference. Here, we describe mutations that interconvert the substrate profiles of LAT2/CD98hc, LAT1/CD98hc, and Asc1/CD98hc. In addition, a region far from the substrate-binding pocket critically influences the conformation of the substrate-binding site and substrate preference. This region accumulates mutations that alter substrate specificity and cause hearing loss and cataracts. Here, we uncover molecular mechanisms governing substrate specificity within the HAT family of neutral amino acid transporters and provide the structural bases for mutations in LAT2/CD98hc that alter substrate specificity and that are associated with several pathologies.

Indexed as

Adaptor Proteins, Signal TransducingAmino AcidsAmino Acids, NeutralAmino Acid Transport SystemsAmino Acid Transport Systems, NeutralBiological TransportCryoelectron MicroscopyFusion Regulatory Protein 1, Heavy ChainHeLa CellsHumansLarge Neutral Amino Acid-Transporter 1Protein DomainsStructure-Activity RelationshipSubstrate SpecificityAdaptor Proteins, Signal TransducingAmino AcidsAmino Acids, NeutralAmino Acid Transport SystemsAmino Acid Transport Systems, NeutralFusion Regulatory Protein 1, Heavy ChainLarge Neutral Amino Acid-Transporter 1LAT2 protein, humanSLC3A2 protein, humanSLC7A5 protein, humanamino acid transportersHATshLAT2structuresubstrate selectivity

Identifiers

PMID34848541
PMCPMC8670485
OpenAlexW3214818881

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.