Evidence map›Paper›PMID 34847747›Full record

ArticleThe CRISPR journal2021

The FusX TALE Base Editor (FusXTBE) for Rapid Mitochondrial DNA Programming of Human Cells

Ankit Sabharwal, Bibekananda Kar, Santiago Restrepo-Castillo, Shannon R Holmberg, Neal D Mathew, Benjamin Luke Kendall, Ryan P Cotter, Zachary WareJoncas, Christoph Seiler, Eiko Nakamaru-Ogiso and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The CRISPR journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Spectrum and Impact of Mitochondrial DNA Mutations in Ovarian Cancer.International journal of molecular sciences · 2025
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Base editing of organellar DNA with programmable deaminases.Nature reviews. Molecular cell biology · 2024
    Review
  19. Trends and prospects in mitochondrial genome editing.Experimental & molecular medicine · 2023
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Ankit SabharwalDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, USA.ORCID 0000-0003-4355-0355
Bibekananda KarDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, USA.ORCID 00-0001-8794-1513
Santiago Restrepo-CastilloMayo Clinic Graduate School of Biomedical Sciences, Virology and Gene Therapy Track, Mayo Clinic, Rochester, Minnesota, USA.ORCID 0000-0001-7881-1813
Shannon R HolmbergDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, USA.ORCID 000-0003-2442-0029
Neal D MathewMitochondrial Medicine Frontier Program, Division of Human Genetics, Department of Pediatrics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.ORCID 0000-0002-4681-9228
Benjamin Luke KendallMayo Clinic Graduate School of Biomedical Sciences, Virology and Gene Therapy Track, Mayo Clinic, Rochester, Minnesota, USA.ORCID 0000-0002-7002-7474
Ryan P CotterDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, USA.ORCID 0000-0002-7798-7443
Zachary WareJoncasDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, USA.ORCID 0000-0003-0714-8641
Christoph SeilerZebrafish Core, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.ORCID 0000-0002-3917-1689
Eiko Nakamaru-OgisoMitochondrial Medicine Frontier Program, Division of Human Genetics, Department of Pediatrics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, USA.ORCID 0000-0003-0931-1940
Karl J ClarkDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, USA.ORCID 0000-0002-9637-0967
Stephen C EkkerDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, Minnesota, USA.ORCID 0000-0003-0726-4212
Mayo Clinic · USChildren's Hospital of Philadelphia · US

Funding

Systematic Vertebrate Functional GenomicsR01GM063904 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI EKKER, STEPHEN CARL · 2001 to 2025
$10.7M
Conditional genetics and precision genome editing resources for ZebrafishR24OD036201 · OD · IOWA STATE UNIVERSITY · PI KARL J CLARK, Stephen Carl Ekker · 2024 to 2026
$3.0M
Building the mitochondrial genome editing repertoireU01AI142773 · NIAID · MAYO CLINIC ROCHESTER · PI CLARK, KARL J, EKKER, STEPHEN CARL · 2018 to 2022
$2.0M
NIAID NIH HHS U01 AI142773NIGMS NIH HHS R01 GM063904NIH HHS R24 OD036201
6 · The paper itself

Abstract

Functional analyses of mitochondria have been hampered by few effective approaches to manipulate mitochondrial DNA (mtDNA) and a lack of existing animal models. Recently a TALE-derived base editor was shown to induce C-to-T (or G-to-A) sequence changes in mtDNA. We report here the FusX TALE Base Editor (FusXTBE) to facilitate broad-based access to TALE mitochondrial base editing technology. TALE Writer is a

Indexed as

DNA, MitochondrialZebrafishAnimalsCRISPR-Cas SystemsGene EditingHumansMitochondriaDNA, Mitochondrial

Identifiers

PMID34847747
PMCPMC8742272
OpenAlexW3216503620

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.