Evidence map›Paper›PMID 34847521›Full record

ArticleJournal of inorganic biochemistry2022

The B

William G Walls, James D Moody, Elizabeth C McDaniel, Maria Villanueva, Eric M Shepard, William E Broderick, Joan B Broderick

Open access · greenAbstract read
In one paragraph

Article in Journal of inorganic biochemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Optimal 1TEL-target protein linker character is target protein-dependent.Acta crystallographica. Section D, Structural biology · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Progress in 1,3-propanediol biosynthesis.Frontiers in bioengineering and biotechnology · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Journal of the American Chemical Society · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

William G WallsDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, 59717, United States of America.
James D MoodyDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, 59717, United States of America.
Elizabeth C McDanielDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, 59717, United States of America.
Maria VillanuevaDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, 59717, United States of America.
Eric M ShepardDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, 59717, United States of America.
William E BroderickDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, 59717, United States of America.
Joan B BroderickDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, 59717, United States of America. Electronic address: jbroderick@montana.edu.
Montana State University · US

Funding

Research Core (Developmental Research Project Program)P20GM103474 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI Jeffrey Good · 2012 to 2026
$60.0M
Iron-Sulfur Clusters in Biological Radical GenerationR01GM054608 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI BRODERICK, JOAN B · 2001 to 2018
$4.7M
Radical SAM Enzymes: Radical Mechanisms Central to BiologyR35GM131889 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI Joan B Broderick · 2019 to 2026
$3.0M
SPECTROSCOPIC STUDIES OF PYRUVATE FORMATE LYASE ACTIVASER29GM054608 · NIGMS · MICHIGAN STATE UNIVERSITY · PI BRODERICK, JOAN B. · 1997 to 2000
$102k
NIGMS NIH HHS P20 GM103474NIGMS NIH HHS R01 GM054608NIGMS NIH HHS R29 GM054608NIGMS NIH HHS R35 GM131889
6 · The paper itself

Abstract

Glycerol dehydratase activating enzyme (GD-AE) is a radical S-adenosyl-l-methionine (SAM) enzyme that installs a catalytically essential amino acid backbone radical onto glycerol dehydratase in bacteria under anaerobic conditions. Although GD-AE is closely homologous to other radical SAM activases that have been shown to cleave the S-C(5') bond of SAM to produce 5'-deoxyadenosine (5'-dAdoH) and methionine, GD-AE from Clostridium butyricum has been reported to instead cleave the S-C(γ) bond of SAM to yield 5'-deoxy-5'-(methylthio)adenosine (MTA). Here we re-investigate the SAM cleavage reaction catalyzed by GD-AE and show that it produces the widely observed 5'-dAdoH, and not the less conventional product MTA.

Indexed as

Bacterial ProteinsClostridium butyricumDeoxyadenosinesHydro-LyasesS-AdenosylmethionineVitamin B 125'-deoxyadenosineBacterial ProteinsDeoxyadenosinesglycerol dehydrataseHydro-LyasesS-AdenosylmethionineVitamin B 125′-deoxy-5′-methylthioadenosine5′-deoxyadenosineAdoMetGlycerol Dehydratase Activating EnzymeGlycyl Radical Enzyme Activating EnzymeRadical SAMS-adenosyl-L-methionine

Identifiers

PMID34847521
PMCPMC8889718
OpenAlexW3211541999

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.