Evidence map›Paper›PMID 34843823›Full record

ArticleJournal of virological methods2022

Alternative SARS-CoV-2 detection protocol from self-collected saliva for mass diagnosis and epidemiological studies in low-incoming regions.

Luana Prado Rolim de Oliveira, Aline Diniz Cabral, Andreia Moreira Dos Santos Carmo, Adriana Feliciano Duran, Diego Marin Fermino, Glaucia Raquel Luciano Veiga, Beatriz da Costa Aguiar Alves, Carla Moreira Santana, Felipe Baena Garcia, Edmar Silva Santos and 7 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virological methods, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 4 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

Luana Prado Rolim de OliveiraCentro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), São Bernardo do Campo, São Paulo, Brazil.
Aline Diniz CabralCentro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), São Bernardo do Campo, São Paulo, Brazil.
Andreia Moreira Dos Santos CarmoSanto André Regional Center, Adolfo Lutz Institute (ALI), Santo André, São Paulo, Brazil.
Adriana Feliciano DuranCentro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), São Bernardo do Campo, São Paulo, Brazil.
Diego Marin FerminoCentro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), São Bernardo do Campo, São Paulo, Brazil.
Glaucia Raquel Luciano VeigaLaboratório de Análises Clínicas, Centro Universitário Saúde ABC (FMABC), Fundação ABC, Santo André, São Paulo, Brazil.
Beatriz da Costa Aguiar AlvesLaboratório de Análises Clínicas, Centro Universitário Saúde ABC (FMABC), Fundação ABC, Santo André, São Paulo, Brazil.
Carla Moreira SantanaCentro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), São Bernardo do Campo, São Paulo, Brazil.
Felipe Baena GarciaCentro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), São Bernardo do Campo, São Paulo, Brazil.
Edmar Silva SantosCentro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), São Bernardo do Campo, São Paulo, Brazil.
Felipe Trovalim JordãoCentro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), São Bernardo do Campo, São Paulo, Brazil.
Andressa Moreira SiqueiraCentro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), São Bernardo do Campo, São Paulo, Brazil.
Ivana Barros de CamposSanto André Regional Center, Adolfo Lutz Institute (ALI), Santo André, São Paulo, Brazil.
Daniela Rodrigues ColpasSanto André Regional Center, Adolfo Lutz Institute (ALI), Santo André, São Paulo, Brazil.
Fernanda Nascimento AlmeidaCentro de Engenharia, Modelagem e Ciências Sociais Aplicadas, Universidade Federal do ABC, São Bernardo do Campo, São Paulo, Brazil.
Fernando Luiz Affonso FonsecaLaboratório de Análises Clínicas, Centro Universitário Saúde ABC (FMABC), Fundação ABC, Santo André, São Paulo, Brazil; Departamento de Ciências Farmacêuticas, Universidade Federal de São Paulo (UNIFESP), Diadema, São Paulo, Brazil.
Márcia Aparecida SperançaCentro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), São Bernardo do Campo, São Paulo, Brazil. Electronic address: marcia.speranca@ufabc.edu.br.
Universidade Federal do ABC · BRFaculdade de Medicina do ABC · BRInstituto Adolfo Lutz · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Until mass vaccination befalls, control of the new betacoronavirus-associated severe acute respiratory syndrome pandemic (SARS-CoV-2) is based on decreasing virus circulation by social distancing and blocking transmission foci after diagnosis. Globally adopted SARS-CoV-2 diagnostic criteria embrace viral RNA detection by quantitative reverse-transcription polymerase chain reaction (qRT-PCR) on nasopharynx secretions, which requires healthcare facilities and specialized personnel for sample collection. To develop an alternative protocol, hydrophilic cotton as the material and saliva as the source for biological sample collection in qRT-PCR/RT-endpoint-PCR SARS-CoV-2 diagnostic methods prepared with local consumables were evaluated using 99 archived nasopharynx samples previously diagnosed as positive for SARS-CoV-2 and 111 prospective saliva samples pared with nasopharynx samples from patients attending the local reference ABC Medical School diagnostic laboratory. The kappa agreement coefficient between the SARS-CoV-2 qRT-PCR and RT-endpoint-PCR was k = 0.97 (95 % CI 0.92-1.00) and k = 0.90 (95 % CI 0.81-0.99), respectively, on SARS-CoV-2-positive archived samples, with the initial qRT-PCR C

Indexed as

COVID-19SARS-CoV-2HumansNasopharynxPandemicsProspective StudiesRNA, ViralSalivaSpecimen HandlingRNA, ViralMolecular diagnosisqRT-PCRRT-endpoint-PCRSalivaSARS-CoV-2

Identifiers

PMID34843823
PMCPMC8626149
OpenAlexW3217033052

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.