Evidence map›Paper›PMID 34843484›Full record

ArticlePLoS neglected tropical diseases2021

Molecular epidemiology of Paracoccidiodes spp. recovered from patients with paracoccidioidomycosis in a teaching hospital from Minas Gerais State of Brazil.

Juliana Andrade-Silva, Leonardo Euripedes Andrade-Silva, Hugo Costa Paes, Lucas Alves, Adair Rosa, Bernardo Guerra Tenório, Marcelo Simão Ferreira, Maria Sueli Soares Felipe, Marcus de Melo Teixeira, Mario León Silva-Vergara

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Juliana Andrade-SilvaInfectious Diseases Unit, Internal Medicine Department, Triangulo Mineiro Federal University, Uberaba, Brazil.
Leonardo Euripedes Andrade-SilvaInfectious Diseases Unit, Internal Medicine Department, Triangulo Mineiro Federal University, Uberaba, Brazil.ORCID 0000-0002-0485-229X
Hugo Costa PaesFaculty of Medicina, University of Brasília, Brasília, Brazil.ORCID 0000-0002-1448-6852
Lucas AlvesFaculty of Medicina, University of Brasília, Brasília, Brazil.ORCID 0000-0001-8932-3954
Adair RosaFaculty of Medicina, University of Brasília, Brasília, Brazil.
Bernardo Guerra TenórioFaculty of Medicina, University of Brasília, Brasília, Brazil.ORCID 0000-0002-7204-9140
Marcelo Simão FerreiraInfectious diseases Unit, Internal Medicine Department Federal University of Uberlândia, Uberlândia, Brazil.
Maria Sueli Soares FelipeGraduate Program in Genomic Sciences, Catholic University of Brasília, Brasília, Brazil.
Marcus de Melo TeixeiraFaculty of Medicina, University of Brasília, Brasília, Brazil.
Mario León Silva-VergaraInfectious Diseases Unit, Internal Medicine Department, Triangulo Mineiro Federal University, Uberaba, Brazil.ORCID 0000-0003-4296-9963
Universidade de Brasília · BRUniversidade Federal do Triângulo Mineiro · BRUniversidade Católica de Brasília · BRUniversidade Federal de Uberlândia · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionParacoccidioidomycosis (PCM) is caused by several species of the Paracoccidioides genus which can be differentiated by interspecific genetic variations, morphology and geographic distribution. Intraspecific variability correlation with clinical and epidemiological aspects of these species still remains unclear. This study aimed to sequence the loci GP43, exon 2 and ARF of 23 clinical isolates of Paracoccidioides spp. from patients in the Southeast Region of Brazil. METHODOLOGY AND MAIN

findingsGenBank was used to compare the present (23) with previous described sequences (151) that included ARF and GP43. It was identified a high polymorphism rate among the 23 isolates in comparison to the other 151. Among the isolates, 22 (95.66%) were S1/P. brasiliensis and 1 (4.34%) was identified as PS2/P. americana. A total of 45 haplotypes were found as follows: 19 from S1/P. brasiliensis (13 from the present study), 15 from P. lutzii, 6 from PS2/P. americana (1 from the present study), 3 from PS3/P. restrepiensis and 2 from PS4/P. venezuelensis. Moreover, exclusive haplotypes according to clinical origin and geographical area were found. S1/P. brasiliensis (HD = 0.655 and K = 4.613) and P. lutzii (HD = 0.649 and K = 2.906) presented the highest rate of polymorphism among all species, from which 12 isolates of the present study were clustered within S1b/P. brasiliensis. The GP43 locus showed a higher variability and was found to be the main reason for the species differentiation.

conclusionsThe results herein decribed show a high intraspecific genetic variability among S1/P. brasiliensis isolates and confirm the predominance of this species in the Southeast region of Brazil. The finding of exclusive haplotypes according to clinical origin and geographical area would suggest correlation between the molecular profile with the clinical form and geographic origin of patients with PCM.

Indexed as

AdolescentAdultBrazilChildChild, PreschoolFemaleGenetic VariationHospitals, TeachingHumansInfantMaleMiddle AgedMolecular EpidemiologyParacoccidioidesParacoccidioidomycosisPhylogeny

Identifiers

PMID34843484
PMCPMC8659327
OpenAlexW3215845148

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.