Evidence map›Paper›PMID 34843240›Full record

ArticleThe journal of physical chemistry. B2021

On the Role of the Conserved Histidine at the Chromophore Isomerization Site in Phytochromes.

Anastasia Kraskov, David Buhrke, Patrick Scheerer, Ida Shaef, Juan C Sanchez, Melissa Carrillo, Moraima Noda, Denisse Feliz, Emina A Stojković, Peter Hildebrandt

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Conserved histidine and tyrosine determine spectral responses through the water network in Deinococcus radiodurans phytochrome.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  7. The structural effect between the output module and chromophore-binding domain is a two-way street via the hairpin extension.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Anastasia KraskovInstitut für Chemie, Technische Universität Berlin, Sekr. PC14, Straße des 17. Juni 135, D-10623 Berlin, Germany.
David BuhrkeInstitut für Chemie, Technische Universität Berlin, Sekr. PC14, Straße des 17. Juni 135, D-10623 Berlin, Germany.ORCID 0000-0003-0294-9183
Patrick ScheererCharité─Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Medical Physics and Biophysics, Group Protein X-ray Crystallography and Signal Transduction, Charitéplatz 1, D-10117 Berlin, Germany.ORCID 0000-0001-5028-2075
Ida ShaefInstitut für Chemie, Technische Universität Berlin, Sekr. PC14, Straße des 17. Juni 135, D-10623 Berlin, Germany.
Juan C SanchezDepartment of Biology, Northeastern Illinois University, 5500 North St. Louis Avenue, Chicago, Illinois 60625, United States.
Melissa CarrilloDepartment of Biology, Northeastern Illinois University, 5500 North St. Louis Avenue, Chicago, Illinois 60625, United States.
Moraima NodaDepartment of Biology, Northeastern Illinois University, 5500 North St. Louis Avenue, Chicago, Illinois 60625, United States.
Denisse FelizDepartment of Biology, Northeastern Illinois University, 5500 North St. Louis Avenue, Chicago, Illinois 60625, United States.
Emina A StojkovićDepartment of Biology, Northeastern Illinois University, 5500 North St. Louis Avenue, Chicago, Illinois 60625, United States.
Peter HildebrandtInstitut für Chemie, Technische Universität Berlin, Sekr. PC14, Straße des 17. Juni 135, D-10623 Berlin, Germany.ORCID 0000-0003-1030-5900
Northeastern Illinois University · USTechnische Universität Berlin · DEHumboldt-Universität zu Berlin · DE

Funding

NU-STARS for Northeastern Illinois Student Training in Academic Research in the SciencesT34GM105549 · NIGMS · NORTHEASTERN ILLINOIS UNIVERSITY · PI CHURCH, RUTH B, HIBDON, JOSEPH EDWARD · 2014 to 2023
$2.8M
NIGMS NIH HHS T34 GM105549
6 · The paper itself

Abstract

Phytochromes are sensory photoreceptors that use light to drive protein structural changes, which in turn trigger physiological reaction cascades. The process starts with a double-bond photoisomerization of the linear methine-bridged tetrapyrrole chromophore in the photosensory core module. The molecular mechanism of the photoconversion depends on the structural and electrostatic properties of the chromophore environment, which are highly conserved in related phytochromes. However, the specific role of individual amino acids is yet not clear. A histidine in the vicinity of the isomerization site is highly conserved and almost invariant among all phytochromes. The present study aimed at analyzing its role by taking advantage of a myxobacterial phytochrome SaBphP1 from

Indexed as

PhytochromeBacterial ProteinsHistidineIsomerismTetrapyrrolesBacterial ProteinsHistidinePhytochromeTetrapyrroles

Identifiers

PMID34843240
PMCPMC9447488
OpenAlexW3215434260

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.