Evidence map›Paper›PMID 34839401›Full record

ArticleFunctional & integrative genomics2022

Endogenic upregulations of HIF/VEGF signaling pathway genes promote air breathing organ angiogenesis in bimodal respiration fish.

Songqian Huang, Lijuan Yang, Li Zhang, Bing Sun, Jian Gao, Zijian Chen, Lei Zhong, Xiaojuan Cao

Abstract read
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In one paragraph

Article in Functional & integrative genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 10 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Songqian HuangCollege of Fisheries, Engineering Research Center of Green Development for Conventional Aquatic Biological Industry in the Yangtze River Economic Belt, Ministry of Education, Huazhong Agricultural University, No.1 Shizishan Stress, Hongshan District, Wuhan, 430070, Hubei Province, China.
Lijuan YangCollege of Fisheries, Engineering Research Center of Green Development for Conventional Aquatic Biological Industry in the Yangtze River Economic Belt, Ministry of Education, Huazhong Agricultural University, No.1 Shizishan Stress, Hongshan District, Wuhan, 430070, Hubei Province, China.
Li ZhangCollege of Marxism, Shanghai University of Finance and Economics, Shanghai, 200433, China.
Bing SunCollege of Fisheries, Engineering Research Center of Green Development for Conventional Aquatic Biological Industry in the Yangtze River Economic Belt, Ministry of Education, Huazhong Agricultural University, No.1 Shizishan Stress, Hongshan District, Wuhan, 430070, Hubei Province, China.
Jian GaoCollege of Fisheries, Engineering Research Center of Green Development for Conventional Aquatic Biological Industry in the Yangtze River Economic Belt, Ministry of Education, Huazhong Agricultural University, No.1 Shizishan Stress, Hongshan District, Wuhan, 430070, Hubei Province, China.
Zijian ChenCollege of Fisheries, Engineering Research Center of Green Development for Conventional Aquatic Biological Industry in the Yangtze River Economic Belt, Ministry of Education, Huazhong Agricultural University, No.1 Shizishan Stress, Hongshan District, Wuhan, 430070, Hubei Province, China.
Lei ZhongFisheries Research Institute, Wuhan Academy of Agricultural Sciences, NO.173 Baishazhou Avenue, Hongshan District, Wuhan, 430207, Hubei Province, China. leiclock@163.com.
Xiaojuan CaoCollege of Fisheries, Engineering Research Center of Green Development for Conventional Aquatic Biological Industry in the Yangtze River Economic Belt, Ministry of Education, Huazhong Agricultural University, No.1 Shizishan Stress, Hongshan District, Wuhan, 430070, Hubei Province, China. caoxiaojuan@mail.hzau.edu.cn.ORCID http://orcid.org/0000-0002-9676-5838
Huazhong Agricultural University · CNShanghai University of Finance and Economics · CNWuhan Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Air-breathing has evolved independently serval times with a variety of air-breathing organs (ABOs) in fish. The physiology of the air-breathing in bimodal respiration fish has been well understood, while studies on molecular mechanisms of the character are very limited. In the present study, we first determined the gill indexes of 110 fish species including 25 and 85 kinds of bimodal respiration fishes and non-air-breathing fishes, respectively. Then combined with histological observations of gills and ABOs/non-ABOs in three bimodal respiration fishes and two non-air breathing fishes, we found that the bimodal respiration fish was always of a degeneration gill and a well-vascularized ABO. Meanwhile, a comparative transcriptome analysis of posterior intestines, namely a well vascularized ABO in Misgurnus anguillicaudatus and a non-ABO in Leptobotia elongata, was performed to expound molecular variations of the air-breathing character. A total of 5,003 orthologous genes were identified. Among them, 1,189 orthologous genes were differentially expressed, which were enriched in 14 KEGG pathways. More specially, the expressions of hemoglobin genes and various HIF/VEGF signaling pathway genes were obviously upregulated in the ABO of M. anguillicaudatus. Moreover, we found that HIF-1α, VEGFAa, and MAP2K1 were co-expressed dramatically higher in ABOs of bimodal respiration fishes than those of non-ABOs of non-air-breathing fishes. These results indicated that the HIF/VEGF pathway played an important role in ABO angiogenesis/formation to promote fish to do aerial respiration. This study will contribute to our understanding of molecular mechanisms of air-breathing in fish.

Indexed as

CypriniformesHypoxia-Inducible Factor 1Neovascularization, PhysiologicRespirationSignal TransductionVascular Endothelial Growth Factor AAnimalsUp-RegulationHypoxia-Inducible Factor 1Vascular Endothelial Growth Factor AAir-breathing organAngiogenesisBimodal respiration fishComparative transcriptomicsHIF/VEGF signaling pathway genes

Identifiers

PMID34839401
OpenAlexW3214850385

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.