Evidence map›Paper›PMID 34839012›Full record

ArticleGenomics, proteomics & bioinformatics2021

ASER: Animal Sex Reversal Database.

Yangyang Li, Zonggui Chen, Hairong Liu, Qiming Li, Xing Lin, Shuhui Ji, Rui Li, Shaopeng Li, Weiliang Fan, Haiping Zhao and 4 more

Open access · goldAbstract read
In one paragraph

Article in Genomics, proteomics & bioinformatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Yangyang LiState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.
Zonggui ChenState Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Innovation Academy for Seed Design, Chinese Academy of Sciences, Wuhan 430072, China.
Hairong LiuSchool of Basic Medical Science, Wuhan University, Wuhan 430071, China.
Qiming LiState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.
Xing LinState Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Innovation Academy for Seed Design, Chinese Academy of Sciences, Wuhan 430072, China.
Shuhui JiSchool of Basic Medical Science, Wuhan University, Wuhan 430071, China.
Rui LiSchool of Basic Medical Science, Wuhan University, Wuhan 430071, China.
Shaopeng LiState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.
Weiliang FanState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China.
Haiping ZhaoSchool of Basic Medical Science, Wuhan University, Wuhan 430071, China.
Zuoyan ZhuState Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Innovation Academy for Seed Design, Chinese Academy of Sciences, Wuhan 430072, China.
Wei HuState Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Innovation Academy for Seed Design, Chinese Academy of Sciences, Wuhan 430072, China; University of Chinese Academy of Sciences, Beijing 100049, China. Electronic address: huwei@ihb.ac.cn.
Yu ZhouState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan 430072, China; Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan 430072, China. Electronic address: yu.zhou@whu.edu.cn.
Daji LuoState Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Innovation Academy for Seed Design, Chinese Academy of Sciences, Wuhan 430072, China; School of Basic Medical Science, Wuhan University, Wuhan 430071, China; University of Chinese Academy of Sciences, Beijing 100049, China. Electronic address: luodaji@ihb.ac.cn.
Wuhan University · CNChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sex reversal, representing extraordinary sexual plasticity during the life cycle, not only triggers reproduction in animals but also affects reproductive and endocrine system-related diseases and cancers in humans. Sex reversal has been broadly reported in animals; however, an integrated resource hub of sex reversal information is still lacking. Here, we constructed a comprehensive database named ASER (Animal Sex Reversal) by integrating sex reversal-related data of 18 species from teleostei to mammalia. We systematically collected 40,018 published papers and mined the sex reversal-associated genes (SRGs), including their regulatory networks, from 1611 core papers. We annotated homologous genes and computed conservation scores for whole genomes across the 18 species. Furthermore, we collected available RNA-seq datasets and investigated the expression dynamics of SRGs during sex reversal or sex determination processes. In addition, we manually annotated 550 in situ hybridization (ISH), fluorescence in situ hybridization (FISH), and immunohistochemistry (IHC) images of SRGs from the literature and described their spatial expression in the gonads. Collectively, ASER provides a unique and integrated resource for researchers to query and reuse organized data to explore the mechanisms and applications of SRGs in animal breeding and human health. The ASER database is publicly available at http://aser.ihb.ac.cn/.

Indexed as

GenomeReproductionAnimalsHumansIn Situ Hybridization, FluorescenceConservationDatabaseOmicsSex reversalSex reversal-associated gene

Identifiers

PMID34839012
PMCPMC9402789
OpenAlexW3215187432

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.