Evidence map›Paper›PMID 34838107›Full record

ArticleParasites & vectors2021

Phylogenetic analysis of the Neotropical Albitarsis Complex based on mitogenome data.

Brian P Bourke, Silvia A Justi, Laura Caicedo-Quiroga, David B Pecor, Richard C Wilkerson, Yvonne-Marie Linton

Abstract read
In one paragraph

Article in Parasites & vectors, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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  6. Determining Gene Order Patterns in theInternational journal of molecular sciences · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Brian P BourkeWalter Reed Biosystematics Unit, Smithsonian Institution Museum Support Center, MRC-534, 4210 Silver Hill Rd., Suitland, MD, 20746, USA. bourkeb@si.edu.
Silvia A JustiWalter Reed Biosystematics Unit, Smithsonian Institution Museum Support Center, MRC-534, 4210 Silver Hill Rd., Suitland, MD, 20746, USA.
Laura Caicedo-QuirogaWalter Reed Biosystematics Unit, Smithsonian Institution Museum Support Center, MRC-534, 4210 Silver Hill Rd., Suitland, MD, 20746, USA.
David B PecorWalter Reed Biosystematics Unit, Smithsonian Institution Museum Support Center, MRC-534, 4210 Silver Hill Rd., Suitland, MD, 20746, USA.
Richard C WilkersonWalter Reed Biosystematics Unit, Smithsonian Institution Museum Support Center, MRC-534, 4210 Silver Hill Rd., Suitland, MD, 20746, USA.
Yvonne-Marie LintonWalter Reed Biosystematics Unit, Smithsonian Institution Museum Support Center, MRC-534, 4210 Silver Hill Rd., Suitland, MD, 20746, USA.

Funding

Reservoirs of Antibiotic Resistance--BioinformaticsU24AI050139 · NIAID · ALLIANCE/PRUDENT USE OF ANTIBIOTICS · PI FELDGARDEN, MICHAEL · 2002 to 2006
$3.1M
NIAID NIH HHS U24 AI050139
6 · The paper itself

Abstract

backgroundSome of the most important malaria vectors in South America belong to the Albitarsis Complex (Culicidae; Anophelinae; Anopheles). Understanding the origin, nature, and geographical distribution of species diversity in this important complex has important implications for vector incrimination, control, and management, and for modelling future responses to climate change, deforestation, and human population expansion. This study attempts to further explore species diversity and evolutionary history in the Albitarsis Complex by undertaking a characterization and phylogenetic analysis of the mitogenome of all 10 putative taxa in the Albitarsis Complex.

methodsMitogenome assembly and annotation allowed for feature comparison among Albitarsis Complex and Anopheles species. Selection analysis was conducted across all 13 protein-coding genes. Maximum likelihood and Bayesian inference methods were used to construct gene and species trees, respectively. Bayesian methods were also used to jointly estimate species delimitation and species trees.

resultsGene composition and order were conserved across species within the complex. Unique signatures of positive selection were detected in two species-Anopheles janconnae and An. albitarsis G-which may have played a role in the recent and rapid diversification of the complex. The COI gene phylogeny does not fully recover the mitogenome phylogeny, and a multispecies coalescent-based phylogeny shows that considerable uncertainty exists through much of the mitogenome species tree. The origin of divergence in the complex dates to the Pliocene/Pleistocene boundary, and divergence within the distinct northern South American clade is estimated at approximately 1 million years ago. Neither the phylogenetic trees nor the delimitation approach rejected the 10-species hypothesis, although the analyses could not exclude the possibility that four putative species with scant a priori support (An. albitarsis G, An. albitarsis H, An. albitarsis I, and An. albitarsis J), represent population-level, rather than species-level, splits.

conclusionThe lack of resolution in much of the species tree and the limitations of the delimitation analysis warrant future studies on the complex using genome-wide data and the inclusion of additional specimens, particularly from two putative species, An. albitarsis I and An. albitarsis J.

Indexed as

CulicidaeGenome, MitochondrialPhylogenyAnimalsAnophelesDNA, MitochondrialElectron Transport Complex IVGenetic VariationMalariaMosquito VectorsSouth AmericaDNA, MitochondrialElectron Transport Complex IVMalariaMitogenomeMosquitoPhylogeneticsPlasmodiumVector

Identifiers

PMID34838107
PMCPMC8627034

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.