Evidence map›Paper›PMID 34837585›Full record

ArticleJournal of clinical monitoring and computing2022

Opal: an implementation science tool for machine learning clinical decision support in anesthesia.

Andrew Bishara, Andrew Wong, Linshanshan Wang, Manu Chopra, Wudi Fan, Alan Lin, Nicholas Fong, Aditya Palacharla, Jon Spinner, Rachelle Armstrong and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of clinical monitoring and computing, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Review
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Andrew Bishara *Department of Anesthesia and Perioperative Care, University of California San Francisco, San Francisco, 550 16th St., San Francisco, CA, 94158, USA. andrew.bishara@ucsf.edu.ORCID 0000-0002-5427-482X
Andrew Wong *School of Medicine, University of California San Francisco, San Francisco, CA, USA.
Linshanshan WangUndergraduate Studies, University of California Berkeley, Berkeley, CA, USA.
Manu ChopraUndergraduate Studies, University of California Berkeley, Berkeley, CA, USA.
Wudi FanUndergraduate Studies, University of California Berkeley, Berkeley, CA, USA.
Alan LinUndergraduate Studies, University of California Berkeley, Berkeley, CA, USA.
Nicholas FongDepartment of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA, USA.
Aditya PalacharlaUndergraduate Studies, University of California Berkeley, Berkeley, CA, USA.
Jon SpinnerDepartment of Anesthesia and Perioperative Care, University of California San Francisco, San Francisco, 550 16th St., San Francisco, CA, 94158, USA.
Rachelle ArmstrongDepartment of Anesthesia and Perioperative Care, University of California San Francisco, San Francisco, 550 16th St., San Francisco, CA, 94158, USA.
Mark J PletcherDepartment of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA, USA.
Dmytro LituievBakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA, USA.
Dexter HadleyBakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA, USA.
Atul ButteBakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA, USA.
University of California, San Francisco · USUniversity of California, Berkeley · US

Funding

Comprehensive Anesthesia Research TrainingT32GM008440 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Judith Hellman · 1996 to 2026
$5.5M
Crowd-Assisted Deep Learning (CrADLe) Digital Curation to Translate Big Data into Precision MedicineU01LM012675 · NLM · UNIVERSITY OF CENTRAL FLORIDA · PI HADLEY, DEXTER D · 2017 to 2020
$2.1M
NIGMS NIH HHS T32 GM008440NLM NIH HHS U01 LM012675
6 · The paper itself

Abstract

Opal is the first published example of a full-stack platform infrastructure for an implementation science designed for ML in anesthesia that solves the problem of leveraging ML for clinical decision support. Users interact with a secure online Opal web application to select a desired operating room (OR) case cohort for data extraction, visualize datasets with built-in graphing techniques, and run in-client ML or extract data for external use. Opal was used to obtain data from 29,004 unique OR cases from a single academic institution for pre-operative prediction of post-operative acute kidney injury (AKI) based on creatinine KDIGO criteria using predictors which included pre-operative demographic, past medical history, medications, and flowsheet information. To demonstrate utility with unsupervised learning, Opal was also used to extract intra-operative flowsheet data from 2995 unique OR cases and patients were clustered using PCA analysis and k-means clustering. A gradient boosting machine model was developed using an 80/20 train to test ratio and yielded an area under the receiver operating curve (ROC-AUC) of 0.85 with 95% CI [0.80-0.90]. At the default probability decision threshold of 0.5, the model sensitivity was 0.9 and the specificity was 0.8. K-means clustering was performed to partition the cases into two clusters and for hypothesis generation of potential groups of outcomes related to intraoperative vitals. Opal's design has created streamlined ML functionality for researchers and clinicians in the perioperative setting and opens the door for many future clinical applications, including data mining, clinical simulation, high-frequency prediction, and quality improvement.

Indexed as

AnesthesiaDecision Support Systems, ClinicalCreatinineHumansImplementation ScienceMachine LearningCreatinineAnesthesia information management system (AIMS)Artificial intelligenceData organization and processingImplementation scienceMachine learningMedical outcome monitoring and prediction

Identifiers

PMID34837585
PMCPMC9275816
OpenAlexW3215836261

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.