Evidence map›Paper›PMID 34836944›Full record

ArticleNature communications2021

Helicobacter pylori FabX contains a [4Fe-4S] cluster essential for unsaturated fatty acid synthesis.

Jiashen Zhou, Lin Zhang, Liping Zeng, Lu Yu, Yuanyuan Duan, Siqi Shen, Jingyan Hu, Pan Zhang, Wenyan Song, Xiaoxue Ruan and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

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    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 9 institutions in 2 countries.

Jiashen Zhou *Department of Pharmacology and Chemical Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Jiao Tong University School of Medicine, 200025, Shanghai, China.ORCID http://orcid.org/0000-0003-1277-0654
Lin Zhang *Department of Pharmacology and Chemical Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Jiao Tong University School of Medicine, 200025, Shanghai, China.
Liping Zeng *Department of Pathogen Biology & Jiangsu Key Laboratory of Pathogen Biology & Sir Run Run Hospital, Nanjing Medical University, 211166, Nanjing, Jiangsu, China.
Lu Yu *High Magnetic Field Laboratory, Chinese Academy of Sciences, 230031, Hefei, China.ORCID http://orcid.org/0000-0003-4852-0008
Yuanyuan Duan *The Laboratory Center for Basic Medical Sciences, Nanjing Medical University, 211166, Nanjing, Jiangsu, China.
Siqi Shen *Department of Pharmacology and Chemical Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Jiao Tong University School of Medicine, 200025, Shanghai, China.
Jingyan HuDepartment of Pharmacology and Chemical Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Jiao Tong University School of Medicine, 200025, Shanghai, China.
Pan ZhangKey Laboratory of Medical Epigenetics and Metabolism, Institutes of Biomedical Sciences, Shanghai Medical College, Fudan University, 200032, Shanghai, China.
Wenyan SongDepartment of Pharmacology and Chemical Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Jiao Tong University School of Medicine, 200025, Shanghai, China.
Xiaoxue RuanDepartment of Medicinal Chemistry, School of Pharmacy, Fudan University, 201203, Shanghai, China.
Jing JiangJiangsu Key Laboratory for Functional Substance of Chinese Medicine, School of Pharmacy, Nanjing University of Chinese Medicine, 210023, Nanjing, Jiangsu, China.
Yinan ZhangJiangsu Key Laboratory for Functional Substance of Chinese Medicine, School of Pharmacy, Nanjing University of Chinese Medicine, 210023, Nanjing, Jiangsu, China.ORCID http://orcid.org/0000-0002-0362-1473
Lu ZhouDepartment of Medicinal Chemistry, School of Pharmacy, Fudan University, 201203, Shanghai, China.
Jia JiaDepartment of Pathogen Biology & Jiangsu Key Laboratory of Pathogen Biology & Sir Run Run Hospital, Nanjing Medical University, 211166, Nanjing, Jiangsu, China.
Xudong HangDepartment of Pathogen Biology & Jiangsu Key Laboratory of Pathogen Biology & Sir Run Run Hospital, Nanjing Medical University, 211166, Nanjing, Jiangsu, China.
Changlin TianHigh Magnetic Field Laboratory, Chinese Academy of Sciences, 230031, Hefei, China.
Houwen LinDepartment of Pharmacology and Chemical Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Jiao Tong University School of Medicine, 200025, Shanghai, China.
Hong-Zhuan ChenInstitute of Interdisciplinary Integrative Biomedical Research, Shuguang Hospital, Shanghai University of Traditional Chinese Medicine, 201203, Shanghai, China. hongzhuan_chen@hotmail.com.
John E CronanDepartments of Microbiology and Biochemistry, University of Illinois, Urbana, IL, 61801, USA. jecronan@illinois.edu.ORCID http://orcid.org/0000-0002-7064-312X
Hongkai BiDepartment of Pathogen Biology & Jiangsu Key Laboratory of Pathogen Biology & Sir Run Run Hospital, Nanjing Medical University, 211166, Nanjing, Jiangsu, China. hkbi@njmu.edu.cn.
Liang ZhangDepartment of Pharmacology and Chemical Biology, State Key Laboratory of Oncogenes and Related Genes, Shanghai Jiao Tong University School of Medicine, 200025, Shanghai, China. liangzhang2014@sjtu.edu.cn.ORCID http://orcid.org/0000-0002-7672-1168
Shanghai Jiao Tong University · CNNanjing Medical University · CNFudan University · CNNanjing University of Chinese Medicine · CNChinese Academy of Sciences · CNShanghai Medical College of Fudan University · CNShanghai University of Traditional Chinese Medicine · CNUniversity of Illinois Urbana-Champaign · USUniversity of Science and Technology of China · CN

Funding

GENETIC APPROACHES TO REGULATION OF LIPID METABOLISMR01AI015650 · NIAID · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI CRONAN, JOHN E. · 1985 to 2022
$12.0M
GENETIC APPROACHES TO REGULATION OF LIPID METABOLISMR37AI015650 · NIAID · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI CRONAN, JOHN E. · 1994 to 2003
$1.8M
NIAID NIH HHS R01 AI015650NIAID NIH HHS R37 AI015650
6 · The paper itself

Abstract

Unsaturated fatty acids (UFAs) are essential for functional membrane phospholipids in most bacteria. The bifunctional dehydrogenase/isomerase FabX is an essential UFA biosynthesis enzyme in the widespread human pathogen Helicobacter pylori, a bacterium etiologically related to 95% of gastric cancers. Here, we present the crystal structures of FabX alone and in complexes with an octanoyl-acyl carrier protein (ACP) substrate or with holo-ACP. FabX belongs to the nitronate monooxygenase (NMO) flavoprotein family but contains an atypical [4Fe-4S] cluster absent in all other family members characterized to date. FabX binds ACP via its positively charged α7 helix that interacts with the negatively charged α2 and α3 helices of ACP. We demonstrate that the [4Fe-4S] cluster potentiates FMN oxidation during dehydrogenase catalysis, generating superoxide from an oxygen molecule that is locked in an oxyanion hole between the FMN and the active site residue His182. Both the [4Fe-4S] and FMN cofactors are essential for UFA synthesis, and the superoxide is subsequently excreted by H. pylori as a major resource of peroxide which may contribute to its pathogenic function in the corrosion of gastric mucosa.

Indexed as

Acyl Carrier ProteinBacterial ProteinsCatalytic DomainCrystallography, X-RayFatty Acids, UnsaturatedHelicobacter pyloriIron-Sulfur ProteinsMixed Function OxygenasesOxidation-ReductionAcyl Carrier ProteinBacterial ProteinsFatty Acids, UnsaturatedIron-Sulfur ProteinsMixed Function Oxygenases

Identifiers

PMID34836944
PMCPMC8626469
OpenAlexW3217695121

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.