Evidence map›Paper›PMID 34834787›Full record

ReviewPlants (Basel, Switzerland)2021

The Potential Use of Isothermal Amplification Assays for In-Field Diagnostics of Plant Pathogens.

Aleksandr V Ivanov, Irina V Safenkova, Anatoly V Zherdev, Boris B Dzantiev

Abstract readReview
In one paragraph

Review in Plants (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. DNA polymerase I: structure, activity, and function in bacterial DNA replication and repair.Critical reviews in biochemistry and molecular biology · 2026
    Review
  3. Rapid On-Site Detection ofPlants (Basel, Switzerland) · 2026
    Article
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  6. Article
  7. Article
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  12. Article
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  16. Article
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  19. Rapid and Simple Detection ofFoods (Basel, Switzerland) · 2023
    Article
  20. Real-time on-site detection of the three 'Frontiers in plant science · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Aleksandr V IvanovA.N. Bach Institute of Biochemistry, Research Centre of Biotechnology, Russian Academy of Sciences, Leninsky Prospect 33, 119071 Moscow, Russia.
Irina V SafenkovaA.N. Bach Institute of Biochemistry, Research Centre of Biotechnology, Russian Academy of Sciences, Leninsky Prospect 33, 119071 Moscow, Russia.ORCID 0000-0002-3621-4321
Anatoly V ZherdevA.N. Bach Institute of Biochemistry, Research Centre of Biotechnology, Russian Academy of Sciences, Leninsky Prospect 33, 119071 Moscow, Russia.ORCID 0000-0003-3008-2839
Boris B DzantievA.N. Bach Institute of Biochemistry, Research Centre of Biotechnology, Russian Academy of Sciences, Leninsky Prospect 33, 119071 Moscow, Russia.ORCID 0000-0003-4008-4918

Funding

Ministry of Science and Higher Education of the Russian Federation 075-15-2020-907
6 · The paper itself

Abstract

Rapid, sensitive, and timely diagnostics are essential for protecting plants from pathogens. Commonly, PCR techniques are used in laboratories for highly sensitive detection of DNA/RNA from viral, viroid, bacterial, and fungal pathogens of plants. However, using PCR-based methods for in-field diagnostics is a challenge and sometimes nearly impossible. With the advent of isothermal amplification methods, which provide amplification of nucleic acids at a certain temperature and do not require thermocyclic equipment, going beyond the laboratory has become a reality for molecular diagnostics. The amplification stage ceases to be limited by time and instruments. Challenges to solve involve finding suitable approaches for rapid and user-friendly plant preparation and detection of amplicons after amplification. Here, we summarize approaches for in-field diagnostics of phytopathogens based on different types of isothermal amplification and discuss their advantages and disadvantages. In this review, we consider a combination of isothermal amplification methods with extraction and detection methods compatible with in-field phytodiagnostics. Molecular diagnostics in out-of-lab conditions are of particular importance for protecting against viral, bacterial, and fungal phytopathogens in order to quickly prevent and control the spread of disease. We believe that the development of rapid, sensitive, and equipment-free nucleic acid detection methods is the future of phytodiagnostics, and its benefits are already visible.

Indexed as

DNA amplicon detectionhelicase dependent amplificationisothermal amplificationloop-mediated amplificationmolecular diagnosticsnucleic acid sequence-based amplificationout-of-lab diagnosticsplant diseasesrecombinase polymerase amplificationrolling circle amplification

Identifiers

PMID34834787
PMCPMC8621059

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.