Evidence map›Paper›PMID 34832529›Full record

ArticlePathogens (Basel, Switzerland)2021

Retrospective Genotyping and Whole Genome Sequencing of a Canine Parvovirus Outbreak in Bangladesh.

Tofazzal Md Rakib, Babu Kanti Nath, Tridip Das, Saroj Kumar Yadav, Shane R Raidal, Shubhagata Das

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 86% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Tofazzal Md RakibDepartment of Pathology and Parasitology, Chattogram Veterinary and Animal Sciences University, Chattogram 4225, Bangladesh.ORCID 0000-0003-2642-9908
Babu Kanti NathSchool of Agriculture, Environment and Veterinary Sciences, Charles Sturt University, Wagga Wagga, NSW 2650, Australia.
Tridip DasSchool of Agriculture, Environment and Veterinary Sciences, Charles Sturt University, Wagga Wagga, NSW 2650, Australia.
Saroj Kumar YadavDepartment of Medicine and Surgery, Chattogram Veterinary and Animal Sciences University, Chattogram 4225, Bangladesh.ORCID 0000-0002-6642-1719
Shane R RaidalSchool of Agriculture, Environment and Veterinary Sciences, Charles Sturt University, Wagga Wagga, NSW 2650, Australia.
Shubhagata DasSchool of Agriculture, Environment and Veterinary Sciences, Charles Sturt University, Wagga Wagga, NSW 2650, Australia.
Charles Sturt University · AUChattogram Veterinary and Animal Sciences University · BD

Funding

Charles Sturt University Shane R. Raidal and Shubhagata Das
6 · The paper itself

Abstract

Canine parvovirus 2 (CPV-2) outbreaks in close quarters such as kennels or shelters can cause substantial case fatality. Thirteen dead Labradors from a secluded kennel of security dogs presented with typical clinical signs and gross pathology of parvovirus infection. Whole genome shotgun sequencing from tissue-extracted genomic DNA detected new CPV-2a as the contributing antigenic variant. Further genotyping using polymerase chain reaction coupled with high-resolution melt assays (PCR-HRM) confirmed new CPV-2a infection in all deceased dogs. PCR-HRM of additional thirty-four clinically suspected dogs suggested that this variant is in wider community circulation, at least in the southeastern part of Bangladesh. We present complete genome sequence of the new CPV-2a variant circulating in the domestic canine population of Bangladesh.

Indexed as

canine parvovirusnew CPV-2aPCR-HRMwhole genome shotgun sequencing

Identifiers

PMID34832529
PMCPMC8619975
OpenAlexW3209117415

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.