Evidence map›Paper›PMID 34831315›Full record

ArticleCells2021

Machine Learning-Based Prediction of Drug-Drug Interactions for Histamine Antagonist Using Hybrid Chemical Features.

Luong Huu Dang, Nguyen Tan Dung, Ly Xuan Quang, Le Quang Hung, Ngoc Hoang Le, Nhi Thao Ngoc Le, Nguyen Thi Diem, Nguyen Thi Thuy Nga, Shih-Han Hung, Nguyen Quoc Khanh Le

Abstract read
In one paragraph

Article in Cells, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Machine Learning in Drug Metabolism Study.Current drug metabolism · 2022
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Luong Huu DangDepartment of Otolaryngology, Faculty of Medicine, University of Medicine and Pharmacy at Ho Chi Minh City, Ho Chi Minh City 70000, Vietnam.ORCID 0000-0002-2383-1718
Nguyen Tan DungDepartment of Rehabilitation, Da Nang Hospital of C, Da Nang City 50000, Vietnam.
Ly Xuan QuangDepartment of Otolaryngology, Faculty of Medicine, University of Medicine and Pharmacy at Ho Chi Minh City, Ho Chi Minh City 70000, Vietnam.
Le Quang HungDepartment of Otolaryngology, University Medical Center, Ho Chi Minh City 70000, Vietnam.
Ngoc Hoang LeGraduate Institute of Biomedical Materials and Tissue Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei City 110, Taiwan.
Nhi Thao Ngoc LeGraduate Institute of Biomedical Materials and Tissue Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei City 110, Taiwan.ORCID 0000-0002-9540-8564
Nguyen Thi DiemDepartment of Otolaryngology, Cai Lay Regional General Hospital, Cai Lay 84000, Vietnam.
Nguyen Thi Thuy NgaFaculty of Nursing and Midwifery, Hanoi Medical University, Ha Noi 10000, Vietnam.
Shih-Han HungInternational Master/Ph.D. Program in Medicine, College of Medicine, Taipei Medical University, Taipei City 110, Taiwan.ORCID 0000-0001-9591-5489
Nguyen Quoc Khanh LeProfessional Master Program in Artificial Intelligence in Medicine, College of Medicine, Taipei Medical University, Taipei 106, Taiwan.ORCID 0000-0003-4896-7926

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The requesting of detailed information on new drugs including drug-drug interactions or targets is often unavailable and resource-intensive in assessing adverse drug events. To shorten the common evaluation process of drug-drug interactions, we present a machine learning framework-HAINI to predict DDI types for histamine antagonist drugs using simplified molecular-input line-entry systems (SMILES) combined with interaction features based on CYP450 group as inputs. The data used in our research consisted of approved drugs of histamine antagonists that are connected to 26,344 DDI pairs from the DrugBank database. Various classification algorithms such as Naive Bayes, Decision Tree, Random Forest, Logistic Regression, and XGBoost were used with 5-fold cross-validation to approach a large-scale DDIs prediction among histamine antagonist drugs. The prediction performance shows that our model outperformed previously published works on DDI prediction with the best precision of 0.788, a recall of 0.921, and an F1-score of 0.838 among 19 given DDIs types. An important finding of the study is that our prediction is based solely on the SMILES and CYP450 and thus can be applied at the early stage of drug development.

Indexed as

Drug InteractionsMachine LearningAlgorithmsCytochrome P-450 Enzyme SystemDatabases as TopicHistamine AntagonistsReproducibility of ResultsROC CurveCytochrome P-450 Enzyme SystemHistamine Antagonistscheminformaticsdrug-drug interactionhistamine antagonistmachine learningPyBioMed packageSMILES

Identifiers

PMID34831315
PMCPMC8621088

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.