Evidence map›Paper›PMID 34831295›Full record

ArticleCells2021

Multidimensional Single-Nuclei RNA-Seq Reconstruction of Adipose Tissue Reveals Adipocyte Plasticity Underlying Thermogenic Response.

Carlos Alberto Oliveira Biagi, Sarah Santiloni Cury, Cleidson Pádua Alves, Nabil Rabhi, Wilson Araujo Silva, Stephen R Farmer, Robson Francisco Carvalho, Miguel Luiz Batista

Abstract read
In one paragraph

Article in Cells, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. The Multifaceted Roles of Bone Marrow Adipocytes in Bone and Hematopoietic Homeostasis.The Journal of clinical endocrinology and metabolism · 2023
    Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Carlos Alberto Oliveira BiagiDepartment of Genetics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto 14051-140, Brazil.ORCID 0000-0003-0700-3135
Sarah Santiloni CuryDepartment of Structural and Functional Biology, Institute of Biosciences, São Paulo State University (UNESP), Botucatu 18618-689, Brazil.ORCID 0000-0002-4803-0933
Cleidson Pádua AlvesDepartment of Translational Genomics, Medical Faculty, University of Cologne, 50923 Cologne, Germany.
Nabil RabhiDepartment of Biochemistry, School of Medicine, Boston University, Boston, MA 02215, USA.ORCID 0000-0002-7365-5951
Wilson Araujo SilvaDepartment of Genetics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto 14051-140, Brazil.ORCID 0000-0001-9364-2886
Stephen R FarmerDepartment of Biochemistry, School of Medicine, Boston University, Boston, MA 02215, USA.
Robson Francisco CarvalhoDepartment of Structural and Functional Biology, Institute of Biosciences, São Paulo State University (UNESP), Botucatu 18618-689, Brazil.ORCID 0000-0002-4901-7714
Miguel Luiz BatistaDepartment of Biochemistry, School of Medicine, Boston University, Boston, MA 02215, USA.ORCID 0000-0001-7022-5131

Funding

Transgenic CoreP30DK046200 · NIDDK · TUFTS MEDICAL CENTER · PI CORKEY, BARBARA E. · 1992 to 2021
$25.0M
Healthy Remodeling of Obese Adipose TissueR01DK117161 · NIDDK · BOSTON UNIVERSITY MEDICAL CAMPUS · PI FARMER, STEPHEN ROBERT · 2018 to 2021
$1.9M
Therapeutic strategies to induce browning of white adipose tissueR01DK117163 · NIDDK · BOSTON UNIVERSITY MEDICAL CAMPUS · PI FARMER, STEPHEN ROBERT · 2019 to 2021
$1.2M
American Heart Association-American Stroke Association 17POST33660875NIDDK NIH HHS P30 DK046200NIDDK NIH HHS R01 DK117161NIDDK NIH HHS R01 DK117163NIH HHS DK117161NIH HHS DK117163
6 · The paper itself

Abstract

Adipose tissue has been classified based on its morphology and function as white, brown, or beige/brite. It plays an essential role as a regulator of systemic metabolism through paracrine and endocrine signals. Recently, multiple adipocyte subtypes have been revealed using RNA sequencing technology, going beyond simply defined morphology but also by their cellular origin, adaptation to metabolic stress, and plasticity. Here, we performed an in-depth analysis of publicly available single-nuclei RNAseq from adipose tissue and utilized a workflow template to characterize adipocyte plasticity, heterogeneity, and secretome profiles. The reanalyzed dataset led to the identification of different subtypes of adipocytes including three subpopulations of thermogenic adipocytes, and provided a characterization of distinct transcriptional profiles along the adipocyte trajectory under thermogenic challenges. This study provides a useful resource for further investigations regarding mechanisms related to adipocyte plasticity and trans-differentiation.

Indexed as

Cell PlasticityRNA-SeqAdipocytes, WhiteAdipose Tissue, WhiteAnimalsCell NucleusMiceTemperatureThermogenesisUncoupling Protein 1Uncoupling Protein 1adipocyte subpopulationscellular compartment predictionmature adipocyte plasticitythermogenic treatmenttranscriptional factors

Identifiers

PMID34831295
PMCPMC8618495

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.