Evidence map›Paper›PMID 34828267›Full record

ArticleGenes2021

Pairwise Correlation Analysis of the Alzheimer's Disease Neuroimaging Initiative (ADNI) Dataset Reveals Significant Feature Correlation.

Erik D Huckvale, Matthew W Hodgman, Brianna B Greenwood, Devorah O Stucki, Katrisa M Ward, Mark T W Ebbert, John S K Kauwe, The Alzheimer's Disease Neuroimaging Initiative, The Alzheimer's Disease Metabolomics Consortium, Justin B Miller

Abstract read
In one paragraph

Article in Genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Erik D HuckvaleSanders-Brown Center on Aging, University of Kentucky, Lexington, KY 40536, USA.
Matthew W HodgmanSanders-Brown Center on Aging, University of Kentucky, Lexington, KY 40536, USA.
Brianna B GreenwoodDepartment of Biology, Brigham Young University, Provo, UT 84602, USA.
Devorah O StuckiDepartment of Biology, Brigham Young University, Provo, UT 84602, USA.
Katrisa M WardDepartment of Biology, Brigham Young University, Provo, UT 84602, USA.
Mark T W EbbertSanders-Brown Center on Aging, University of Kentucky, Lexington, KY 40536, USA.
John S K KauweDepartment of Biology, Brigham Young University, Provo, UT 84602, USA.
The Alzheimer's Disease Neuroimaging Initiative
The Alzheimer's Disease Metabolomics Consortium
Justin B MillerSanders-Brown Center on Aging, University of Kentucky, Lexington, KY 40536, USA.ORCID 0000-0002-5309-1570

Funding

Alzheimer's Disease Neuroimaging Initiative - SupplementU01AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WEINER, MICHAEL W · 2004 to 2015
$121.0M
Epidemiology of Alzheimer’s disease resilience and risk pedigreesRF1AG054052 · NIA · BRIGHAM YOUNG UNIVERSITY · PI KAUWE, JOHN SAI KEONG · 2016 to 2020
$3.6M
Using long-range technologies as a multi-omic approach to understand Alzheimer’s disease in brain tissueR01AG068331 · NIA · UNIVERSITY OF KENTUCKY · PI EBBERT, MARK T W · 2020 to 2024
$3.0M
Understanding how structural mutations and individual RNA isoformsare involved in human health and diseaseR35GM138636 · NIGMS · UNIVERSITY OF KENTUCKY · PI Mark T W Ebbert · 2020 to 2026
$2.9M
NIA NIH HHS R01 AG068331NIA NIH HHS RF1 AG054052NIA NIH HHS U01 AG024904NIGMS NIH HHS R35 GM138636
6 · The paper itself

Abstract

The Alzheimer's Disease Neuroimaging Initiative (ADNI) contains extensive patient measurements (e.g., magnetic resonance imaging [MRI], biometrics, RNA expression, etc.) from Alzheimer's disease (AD) cases and controls that have recently been used by machine learning algorithms to evaluate AD onset and progression. While using a variety of biomarkers is essential to AD research, highly correlated input features can significantly decrease machine learning model generalizability and performance. Additionally, redundant features unnecessarily increase computational time and resources necessary to train predictive models. Therefore, we used 49,288 biomarkers and 793,600 extracted MRI features to assess feature correlation within the ADNI dataset to determine the extent to which this issue might impact large scale analyses using these data. We found that 93.457% of biomarkers, 92.549% of the gene expression values, and 100% of MRI features were strongly correlated with at least one other feature in ADNI based on our Bonferroni corrected α (

Indexed as

Genetic Association StudiesNeuroimagingTranscriptomeAlzheimer DiseaseBiomarkersDatasets as TopicHumansMachine LearningMagnetic Resonance ImagingBiomarkersADNIAlzheimer’s diseasefeature reductionmachine learningpairwise feature correlation

Identifiers

PMID34828267
PMCPMC8619902

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.