Evidence map›Paper›PMID 34825729›Full record

ArticleMagnetic resonance in medicine2022

Multi-band- and in-plane-accelerated diffusion MRI enabled by model-based deep learning in q-space and its extension to learning in the spherical harmonic domain.

Merry Mani, Baolian Yang, Girish Bathla, Vincent Magnotta, Mathews Jacob

Abstract read
In one paragraph

Article in Magnetic resonance in medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. A review of diffusion MRI in mood disorders: mechanisms and predictors of treatment response.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2024
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Merry ManiDepartment of Radiology, University of Iowa, Iowa City, Iowa, USA.ORCID 0000-0001-8602-1109
Baolian YangGE Healthcare, Waukesha, Wisconsin, USA.
Girish BathlaDepartment of Radiology, University of Iowa, Iowa City, Iowa, USA.
Vincent MagnottaDepartment of Radiology, University of Iowa, Iowa City, Iowa, USA.
Mathews JacobDepartment of Electrical and Computer Engineering, University of Iowa, Iowa City, Iowa, USA.

Funding

University of Iowam - Whole Body 7T MRI ScannerS10RR028821 · NCRR · UNIVERSITY OF IOWA · PI MAGNOTTA, VINCENT A · 2010 to 2010
$8.0M
Model Based Deep Learning Framework for Ultra-High Resolution Multi-Contrast MRIR01AG067078 · NIA · UNIVERSITY OF VIRGINIA · PI JACOB, MATHEWS · 2021 to 2025
$3.4M
University of Iowa – 3T ESP MRI ScannerS10OD030220 · OD · UNIVERSITY OF IOWA · PI MAGNOTTA, VINCENT A · 2021 to 2021
$1.9M
University of Iowa - Research 3T MRI Connectome UpgradeS10OD025025 · OD · UNIVERSITY OF IOWA · PI MAGNOTTA, VINCENT A · 2018 to 2018
$1.9M
Fast Multi-dimensional Diffusion MRI with Sparse Sampling and Model-basedDeep Learning ReconstructionR01EB031169 · NIBIB · UNIVERSITY OF VIRGINIA · PI MANI, MERRY · 2021 to 2024
$1.7M
Characterization and Enhancement of Functional T1rho ImagingR01EB022019 · NIBIB · UNIVERSITY OF IOWA · PI MAGNOTTA, VINCENT A, WEMMIE, JOHN A · 2017 to 2020
$1.4M
Long Term Aerobic Exercise to Slow Progression in Parkinson's DiseaseI01RX002987 · VA · IOWA CITY VA MEDICAL CENTER · PI UC, ERGUN Y · 2019 to 2024
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NCRR NIH HHS S10 RR028821NIA NIH HHS R01 AG067078NIBIB NIH HHS R01 EB022019NIBIB NIH HHS R01 EB031169NIH HHS S10 OD025025NIH HHS S10 OD030220RRD VA I01 RX002987
6 · The paper itself

Abstract

purposeTo propose a new method for the recovery of combined in-plane- and multi-band (MB)-accelerated diffusion MRI data.

methodsCombining MB acceleration with in-plane acceleration is crucial to improve the time efficiency of high (angular and spatial) resolution diffusion scans. However, as the MB factor and in-plane acceleration increase, the reconstruction becomes challenging due to the heavy aliasing. The new reconstruction utilizes an additional q-space prior to constrain the recovery, which is derived from the previously proposed qModeL framework. Specifically, the qModeL prior provides a pre-learned representation of the diffusion signal space to which the measured data belongs. We show that the pre-learned q-space prior along with a model-based iterative reconstruction that accommodate multi-band unaliasing, can efficiently reconstruct the in-plane- and MB-accelerated data. The power of joint reconstruction is maximally utilized by using an incoherent under-sampling pattern in the k-q domain. We tested the proposed method on single- and multi-shell data, with high/low angular resolution, high/low spatial resolution, healthy/abnormal tissues, and 3T/7T field strengths. Furthermore, the learning is extended to the spherical harmonic basis, to provide a rotational invariant learning framework.

resultsThe qModeL joint reconstruction is shown to simultaneously unalias and jointly recover DWIs with reasonable accuracy in all the cases studied. The reconstruction error from 18-fold accelerated multi-shell datasets was <3%. The microstructural maps derived from the accelerated acquisitions also exhibit reasonable accuracy for both healthy and abnormal tissues. The deep learning (DL)-enabled reconstructions are comparable to those derived using traditional methods.

conclusionqModeL enables the joint recovery of combined in-plane- and MB-accelerated dMRI utilizing DL.

Indexed as

Deep LearningAccelerationAlgorithmsBrainDiffusion Magnetic Resonance ImagingImage Processing, Computer-Assistedautoencoder q-spaceCAIPI sampling q-spacejoint reconstructionk-q accelerationmachine learning diffusion MRImulti-band joint reconstructionNODDI deep learningq-space deep learningrotational invariant q-space learningspherical harmonics

Identifiers

PMID34825729
PMCPMC8855531

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.