Evidence map›Paper›PMID 34824462›Full record

ArticleNature structural & molecular biology2021

Targeted substrate loop insertion by VCP/p97 during PP1 complex disassembly.

Johannes van den Boom, Anja F Kueck, Bojana Kravic, Helen Müschenborn, Maike Giesing, Dongqing Pan, Farnusch Kaschani, Markus Kaiser, Andrea Musacchio, Hemmo Meyer

Abstract read
PubMed Publisher
In one paragraph

Article in Nature structural & molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Molecular Tweezers Block the Functional Pore of a Protein Machine.Journal of the American Chemical Society · 2025
    Article
  2. Alternating binding and p97-mediated dissociation of SDS22 and I3 recycles active PP1 between holophosphatases.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Article
  4. P-NADs:Heliyon · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Visualization of the Cdc48 AAA+ ATPase protein unfolding pathway.bioRxiv : the preprint server for biology · 2023
    Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. AAA+ proteins: one motor, multiple ways to work.Biochemical Society transactions · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Johannes van den Boom *Centre for Medical Biotechnology, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.ORCID http://orcid.org/0000-0002-2075-9351
Anja F Kueck *Centre for Medical Biotechnology, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.ORCID http://orcid.org/0000-0003-2746-2793
Bojana KravicCentre for Medical Biotechnology, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.
Helen MüschenbornCentre for Medical Biotechnology, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.
Maike GiesingCentre for Medical Biotechnology, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.
Dongqing PanDepartment of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, Dortmund, Germany.ORCID http://orcid.org/0000-0003-3701-8442
Farnusch KaschaniAnalytics Core Facility, Centre for Medical Biotechnology, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.
Markus KaiserAnalytics Core Facility, Centre for Medical Biotechnology, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.ORCID http://orcid.org/0000-0002-6540-8520
Andrea MusacchioCentre for Medical Biotechnology, Faculty of Biology, University of Duisburg-Essen, Essen, Germany.
Hemmo MeyerCentre for Medical Biotechnology, Faculty of Biology, University of Duisburg-Essen, Essen, Germany. hemmo.meyer@uni-due.de.ORCID http://orcid.org/0000-0003-1883-1796
University of Duisburg-Essen · DEKyoto University · JPMax Planck Institute of Molecular Physiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The AAA-ATPase VCP/p97/Cdc48 unfolds proteins by threading them through its central pore, but how substrates are recognized and inserted into the pore in diverse pathways has remained controversial. Here, we show that p97, with its adapter p37, binds an internal recognition site (IRS) within inhibitor-3 (I3) and then threads a peptide loop into its channel to strip I3 off protein phosphatase-1 (PP1). Of note, the IRS is adjacent to the prime interaction site of I3 to PP1, and IRS mutations block I3 processing both in vitro and in cells. In contrast, amino- and carboxy-terminal regions of I3 are not required, and even circularization of I3 does not prevent I3 processing. This was confirmed by an in vitro Förster resonance energy transfer assay that allowed kinetic analysis of the reaction. Thus, our data uncover how PP1 is released from its inhibitory partner for activation and demonstrate a remarkable plasticity in substrate threading by p97.

Indexed as

Adaptor Proteins, Signal TransducingAnimalsBinding SitesCatalytic DomainCell LineFluorescence Resonance Energy TransferHEK293 CellsHumansProtein BindingProtein Phosphatase 1Protein UnfoldingSf9 CellsValosin Containing ProteinAdaptor Proteins, Signal Transducingp37 protein, humanProtein Phosphatase 1Valosin Containing ProteinVCP protein, human

Identifiers

PMID34824462
OpenAlexW3217677467

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.