Evidence map›Paper›PMID 34824277›Full record

ArticleNature communications2021

NUDT2 initiates viral RNA degradation by removal of 5'-phosphates.

Beatrice T Laudenbach, Karsten Krey, Quirin Emslander, Line Lykke Andersen, Alexander Reim, Pietro Scaturro, Sarah Mundigl, Christopher Dächert, Katrin Manske, Markus Moser and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Application of Mammalian Nudix Enzymes to Capped RNA Analysis.Pharmaceuticals (Basel, Switzerland) · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. A Genetic Circuit Design for Targeted Viral RNA Degradation.Bioengineering (Basel, Switzerland) · 2023
    Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 1 country.

Beatrice T Laudenbach *Technical University of Munich, School of Medicine, Institute of Virology, 81675, Munich, Germany.
Karsten Krey *Technical University of Munich, School of Medicine, Institute of Virology, 81675, Munich, Germany.ORCID http://orcid.org/0000-0002-1280-4722
Quirin Emslander *Technical University of Munich, School of Medicine, Institute of Virology, 81675, Munich, Germany.
Line Lykke AndersenTechnical University of Munich, School of Medicine, Institute of Virology, 81675, Munich, Germany.
Alexander ReimDepartment of Proteomics and Signal transduction, Max-Planck Institute of Biochemistry, Martinsried/Munich, Germany.ORCID http://orcid.org/0000-0001-8388-8620
Pietro ScaturroTechnical University of Munich, School of Medicine, Institute of Virology, 81675, Munich, Germany.ORCID http://orcid.org/0000-0001-9098-3087
Sarah MundiglTechnical University of Munich, School of Medicine, Institute of Virology, 81675, Munich, Germany.
Christopher DächertResearch Group "Dynamics of Early Viral Infection and the Innate Antiviral Response" (division F170), German Cancer Research Center, Heidelberg (DKFZ), Heidelberg, Germany.
Katrin ManskeTechnical University of Munich, School of Medicine, Institute of Molecular Immunology, Munich, Germany.
Markus MoserDepartment of Molecular Medicine, Max-Planck Institute of Biochemistry, Martinsried/Munich, Germany.
Janos LudwigInstitute of Clinical Chemistry and Clinical Pharmacology, University Hospital Bonn, Bonn, Germany.
Dirk WohlleberTechnical University of Munich, School of Medicine, Institute of Molecular Immunology, Munich, Germany.ORCID http://orcid.org/0000-0003-3861-5150
Andrea KrögerOtto von Guericke University Magdeburg, Institute for Medical Microbiology, Magdeburg, Germany.
Marco BinderResearch Group "Dynamics of Early Viral Infection and the Innate Antiviral Response" (division F170), German Cancer Research Center, Heidelberg (DKFZ), Heidelberg, Germany.ORCID http://orcid.org/0000-0002-5805-6109
Andreas PichlmairTechnical University of Munich, School of Medicine, Institute of Virology, 81675, Munich, Germany. andreas.pichlmair@tum.de.ORCID http://orcid.org/0000-0002-0166-1367
Technical University of Munich · DEMax Planck Institute of Biochemistry · DEGerman Cancer Research Center · DEGerman Center for Infection Research · DEHelmholtz Centre for Infection Research · DELeibniz Institute of Virology (LIV) · DEUniversity Hospital Bonn · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While viral replication processes are largely understood, comparably little is known on cellular mechanisms degrading viral RNA. Some viral RNAs bear a 5'-triphosphate (PPP-) group that impairs degradation by the canonical 5'-3' degradation pathway. Here we show that the Nudix hydrolase 2 (NUDT2) trims viral PPP-RNA into monophosphorylated (P)-RNA, which serves as a substrate for the 5'-3' exonuclease XRN1. NUDT2 removes 5'-phosphates from PPP-RNA in an RNA sequence- and overhang-independent manner and its ablation in cells increases growth of PPP-RNA viruses, suggesting an involvement in antiviral immunity. NUDT2 is highly homologous to bacterial RNA pyrophosphatase H (RppH), a protein involved in the metabolism of bacterial mRNA, which is 5'-tri- or diphosphorylated. Our results show a conserved function between bacterial RppH and mammalian NUDT2, indicating that the function may have adapted from a protein responsible for RNA turnover in bacteria into a protein involved in the immune defense in mammals.

Indexed as

RNA StabilityAdaptation, PhysiologicalAnimalsBone Marrow CellsCRISPR-Cas SystemsExonucleasesExoribonucleasesFemaleGene Knockout TechniquesHEK293 CellsHeLa CellsHumansImmunity, InnateMaleMiceMice, Inbred C57BLExonucleasesExoribonucleasesMicrotubule-Associated ProteinsNudix HydrolasesNUDT2 protein, humanPhosphoric Monoester HydrolasesPolyphosphatesRNA, BacterialRNA, MessengerRNA, Viraltriphosphoric acidXRN1 protein, human

Identifiers

PMID34824277
PMCPMC8616924
OpenAlexW3217153615

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.