Evidence map›Paper›PMID 34824253›Full record

ArticleNature communications2021

Spike residue 403 affects binding of coronavirus spikes to human ACE2.

Fabian Zech, Daniel Schniertshauer, Christoph Jung, Alexandra Herrmann, Arne Cordsmeier, Qinya Xie, Rayhane Nchioua, Caterina Prelli Bozzo, Meta Volcic, Lennart Koepke and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Binding affinity between coronavirus spike protein and human ACE2 receptor.Computational and structural biotechnology journal · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 1 country.

Fabian ZechInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.
Daniel SchniertshauerInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.
Christoph JungInstitute of Electrochemistry, Ulm University, 89081, Ulm, Germany.
Alexandra HerrmannInstitute of Clinical and Molecular Virology, University Hospital Erlangen, Friedrich-Alexander Universität Erlangen-Nürnberg, 91054, Erlangen, Germany.
Arne CordsmeierInstitute of Clinical and Molecular Virology, University Hospital Erlangen, Friedrich-Alexander Universität Erlangen-Nürnberg, 91054, Erlangen, Germany.
Qinya XieInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.
Rayhane NchiouaInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.
Caterina Prelli BozzoInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.
Meta VolcicInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.ORCID 0000-0001-6406-7683
Lennart KoepkeInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.ORCID 0000-0001-9788-1972
Janis A MüllerInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.ORCID 0000-0002-0347-416X
Jana KrügerDepartment of Internal Medicine I, Ulm University Medical Center, 89081, Ulm, Germany.ORCID 0000-0003-0829-2872
Sandra HellerDepartment of Internal Medicine I, Ulm University Medical Center, 89081, Ulm, Germany.ORCID 0000-0002-8704-2646
Steffen StengerInstitute of Medical Microbiology and Hygiene, Ulm University Medical Centre, 89081, Ulm, Germany.
Markus HoffmannInfection Biology Unit, German Primate Center-Leibniz Institute for Primate Research, Göttingen, Germany.ORCID 0000-0003-4603-7696
Stefan PöhlmannInfection Biology Unit, German Primate Center-Leibniz Institute for Primate Research, Göttingen, Germany.ORCID 0000-0001-6086-9136
Alexander KlegerDepartment of Internal Medicine I, Ulm University Medical Center, 89081, Ulm, Germany.ORCID 0000-0003-0592-5232
Timo JacobInstitute of Electrochemistry, Ulm University, 89081, Ulm, Germany.
Karl-Klaus ConzelmannMax von Pettenkofer-Institute of Virology, Medical Faculty, and Gene Center, Ludwig-Maximilians-Universität München, 81377, Munich, Germany.ORCID 0000-0002-8614-3656
Armin EnsserInstitute of Clinical and Molecular Virology, University Hospital Erlangen, Friedrich-Alexander Universität Erlangen-Nürnberg, 91054, Erlangen, Germany.
Konstantin M J SparrerInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany.ORCID 0000-0002-8682-1779
Frank KirchhoffInstitute of Molecular Virology, Ulm University Medical Center, 89081, Ulm, Germany. Frank.Kirchhoff@uni-ulm.de.ORCID 0000-0002-7052-2360
Universität Ulm · DEFriedrich-Alexander-Universität Erlangen-Nürnberg · DEGerman Primate Center · DEKarlsruhe Institute of Technology · DEInstitute of Medical Microbiology and Hygiene · DELudwig-Maximilians-Universität München · DE

Funding

Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 01KI20172A SENSE-CoV2Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) IMMUNOMODBundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) Restrict SARS-CoV-2Deutsche Forschungsgemeinschaft (German Research Foundation) Co260/6-1Deutsche Forschungsgemeinschaft (German Research Foundation) CRC 1279Deutsche Forschungsgemeinschaft (German Research Foundation) KL 2544/5-1,7-1Deutsche Forschungsgemeinschaft (German Research Foundation) KL 2544/6-1Deutsche Forschungsgemeinschaft (German Research Foundation) KL 2544/8-1Deutsche Forschungsgemeinschaft (German Research Foundation) SP1600/6-1Deutsche Forschungsgemeinschaft (German Research Foundation) SPP 1923
6 · The paper itself

Abstract

The bat sarbecovirus RaTG13 is a close relative of SARS-CoV-2, the cause of the COVID-19 pandemic. However, this bat virus was most likely unable to directly infect humans since its Spike (S) protein does not interact efficiently with the human ACE2 receptor. Here, we show that a single T403R mutation increases binding of RaTG13 S to human ACE2 and allows VSV pseudoparticle infection of human lung cells and intestinal organoids. Conversely, mutation of R403T in the SARS-CoV-2 S reduces pseudoparticle infection and viral replication. The T403R RaTG13 S is neutralized by sera from individuals vaccinated against COVID-19 indicating that vaccination might protect against future zoonoses. Our data suggest that a positively charged amino acid at position 403 in the S protein is critical for efficient utilization of human ACE2 by S proteins of bat coronaviruses. This finding could help to better predict the zoonotic potential of animal coronaviruses.

Indexed as

Protein BindingAngiotensin-Converting Enzyme 2AnimalsCaco-2 CellsCloning, MolecularCOVID-19COVID-19 VaccinesHEK293 CellsHumansMolecular Dynamics SimulationMutationRepliconSARS-CoV-2Species SpecificitySpike Glycoprotein, CoronavirusStem CellsACE2 protein, humanAngiotensin-Converting Enzyme 2COVID-19 VaccinesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID34824253
PMCPMC8617078
OpenAlexW3216980587

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.