Evidence map›Paper›PMID 34824221›Full record

ArticleNature communications2021

Cryo-EM structures of intermediates suggest an alternative catalytic reaction cycle for cytochrome c oxidase.

F Kolbe, S Safarian, Ż Piórek, S Welsch, H Müller, H Michel

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Proton-Coupled Electron Transfer in Cytochrome c Oxidase: Heme a Controls the Protonation Dynamics of E286.Chemphyschem : a European journal of chemical physics and physical chemistry · 2025
    Article
  3. Article
  4. Structural and functional mechanisms of cytochrome c oxidase.Journal of inorganic biochemistry · 2025
    Review
  5. Article
  6. Review
  7. Mechanisms of reduced myocardial energetics of the dystrophic heart.American journal of physiology. Heart and circulatory physiology · 2024
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Electric fields control water-gated proton transfer in cytochromeProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Review
  17. Structural basis of mammalian complex IV inhibition by steroids.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Review
  19. DFT Calculations for Mössbauer Properties on Dinuclear Center Models of the Resting Oxidized Cytochrome c Oxidase.Chemphyschem : a European journal of chemical physics and physical chemistry · 2022
    Article
  20. Recent Advances in Structural Studies of CytochromeInternational journal of molecular sciences · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

F Kolbe *Department of Molecular Membrane Biology, Max Planck Institute of Biophysics, D-60438, Frankfurt/Main, Germany.ORCID http://orcid.org/0000-0001-9448-3258
S Safarian *Department of Molecular Membrane Biology, Max Planck Institute of Biophysics, D-60438, Frankfurt/Main, Germany.ORCID http://orcid.org/0000-0002-0232-1612
Ż PiórekDepartment of Molecular Membrane Biology, Max Planck Institute of Biophysics, D-60438, Frankfurt/Main, Germany.
S WelschCentral Electron Microscopy Facility, Max Planck Institute of Biophysics, D-60438, Frankfurt am Main, Germany.ORCID http://orcid.org/0000-0002-6049-6664
H MüllerDepartment of Molecular Membrane Biology, Max Planck Institute of Biophysics, D-60438, Frankfurt/Main, Germany.
H MichelDepartment of Molecular Membrane Biology, Max Planck Institute of Biophysics, D-60438, Frankfurt/Main, Germany. hartmut.michel@biophys.mpg.de.ORCID http://orcid.org/0000-0003-4351-7846
Max Planck Institute of Biophysics · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytochrome c oxidases are among the most important and fundamental enzymes of life. Integrated into membranes they use four electrons from cytochrome c molecules to reduce molecular oxygen (dioxygen) to water. Their catalytic cycle has been considered to start with the oxidized form. Subsequent electron transfers lead to the E-state, the R-state (which binds oxygen), the P-state (with an already split dioxygen bond), the F-state and the O-state again. Here, we determined structures of up to 1.9 Å resolution of these intermediates by single particle cryo-EM. Our results suggest that in the O-state the active site contains a peroxide dianion and in the P-state possibly an intact dioxygen molecule, the F-state may contain a superoxide anion. Thus, the enzyme's catalytic cycle may have to be turned by 180 degrees.

Indexed as

CatalysisCryoelectron MicroscopyElectronsElectron Transport Complex IVEscherichia coliMembrane ProteinsModels, MolecularOxygenParacoccus denitrificansPeroxidesProtonsElectron Transport Complex IVMembrane ProteinsOxygenPeroxidesProtons

Identifiers

PMID34824221
PMCPMC8617209
OpenAlexW3216141905

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.