Evidence map›Paper›PMID 34823478›Full record

ArticleBMC infectious diseases2021

Epidemic size, trend and spatiotemporal mapping of SARS-CoV-2 using geographical information system in Alborz Province, Iran.

Kourosh Kabir, Ali Taherinia, Davoud Ashourloo, Ahmad Khosravi, Hossien Karim, Hamid Salehi Shahrabi, Mojtaba Hedayat Yaghoobi, Alireza Soleimani, Zaynab Siami, Mohammad Noorisepehr and 8 more

Abstract read
In one paragraph

Article in BMC infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Kourosh Kabir *Department of Community Medicine, School of Medicine, Alborz University of Medical Sciences, Karaj, Iran.
Ali Taherinia *Department of Emergency Medicine, Alborz University of Medical Sciences, Karaj, Iran.
Davoud AshourlooRemote Sensing and GIS Research Center, Shahid Beheshti University, Tehran, Iran.
Ahmad KhosraviDepartment of Epidemiology, School of Public Health, Shahroud University of Medical Sciences, Shahroud, Iran.
Hossien KarimDepartment of Cardiology, School of Medicine, Alborz University of Medical Sciences, Karaj, Iran.
Hamid Salehi ShahrabiRemote Sensing and GIS Research Center, Shahid Beheshti University, Tehran, Iran.
Mojtaba Hedayat YaghoobiDepartment of Infectious Diseases, School of Medicine, Alborz University of Medical Sciences, Karaj, Iran.
Alireza SoleimaniDepartment of Infectious Diseases, School of Medicine, Alborz University of Medical Sciences, Karaj, Iran.
Zaynab SiamiDepartment of Infectious Diseases, School of Medicine, Alborz University of Medical Sciences, Karaj, Iran.
Mohammad NoorisepehrDepartment of Environmental Health, School of Health, Alborz University of Medical Sciences, Karaj, Iran.
Ramin TajbakhshDepartment of Internal Medicine, School of Medicine, Alborz University of Medical Sciences, Karaj, Iran.
Mohammad Reza MaghsoudiDepartment of Emergency Medicine, Alborz University of Medical Sciences, Karaj, Iran.
Mehran LakDepartment of Infectious Diseases, School of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Parham MardiStudent Research Committee, School of Medicine, Alborz University of Medical Sciences, Karaj, Iran.
Behnaz NouriStudent Research Committee, School of Medicine, Alborz University of Medical Sciences, Karaj, Iran.
Mohammad MohammadzadehDepartment of Microbiology, School of Medicine, Alborz University of Medical Sciences, Karaj, Iran.
Mehdi AzimzadehInformation Technology Unit, Alborz University of Medical Sciences, Karaj, Iran.
Mahmood BakhtiyariDepartment of Community Medicine, School of Medicine, Alborz University of Medical Sciences, Karaj, Iran. Mahmood.bakhtiyari@ymail.com.ORCID http://orcid.org/0000-0002-9228-4615

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe first confirmed cases of COVID-19 in Iran were reported in Qom city. Subsequently, the neighboring provinces and gradually all 31 provinces of Iran were involved. This study aimed to investigate the case fatility rate, basic reproductive number in different period of epidemic, projection of daily and cumulative incidence cases and also spatiotemporal mapping of SARS-CoV-2 in Alborz province, Iran.

methodsA confirmed case of COVID-19 infection was defined as a case with a positive result of viral nucleic acid testing in respiratory specimens. Serial interval (SI) was fitted by gamma distribution and considered the likelihood-based R0 using a branching process with Poisson likelihood. Seven days average of cases, deaths, doubling times and CFRs used to draw smooth charts. kernel density tool in Arc GIS (Esri) software has been employed to compute hot spot area of the study site.

resultsThe maximum-likelihood value of R0 was 2.88 (95%, CI: 2.57-3.23) in the early 14 days of epidemic. The case fatility rate for Alborz province (Iran) on March 10, was 8.33% (95%, CI:6.3-11), and by April 20, it had an increasing trend and reached 12.9% (95%,CI:11.5-14.4). The doubling time has been increasing from about two days and then reached about 97 days on April 20, 2020, which shows the slowdown in the spread rate of the disease. Also, from March 26 to April 2, 2020 the whole Geographical area of Karj city was almost affected by SARS-CoV-2.

conclusionsThe R0 of COVID-19 in Alborz province was substantially high at the beginning of the epidemic, but with preventive measures and public education and GIS based monitoring of the cases,it has been reduced to 1.19 within two months. This reduction highpoints the attainment of preventive measures in place, however we must be ready for any second epidemic waves during the next months.

Indexed as

COVID-19EpidemicsGeographic Information SystemsHumansIranLikelihood FunctionsSARS-CoV-2Basic reproductive numberCase fatility rateCOVID-19Geographic information systemIran

Identifiers

PMID34823478
PMCPMC8613730

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.