Evidence map›Paper›PMID 34822777›Full record

ArticleCell host & microbe2022

Human gut bacterial metabolism drives Th17 activation and colitis.

Margaret Alexander, Qi Yan Ang, Renuka R Nayak, Annamarie E Bustion, Moriah Sandy, Bing Zhang, Vaibhav Upadhyay, Katherine S Pollard, Susan V Lynch, Peter J Turnbaugh

Open access · greenAbstract read
In one paragraph

Article in Cell host & microbe, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 179 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
179citing papers in PubMed, 4 pooled it
15.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

179 citing papers in PubMed, 4 syntheses or guidelines pooled it, 247 citations in OpenAlex.

  1. Pooled it
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  7. Oncoimmunology · 2026
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  16. International journal of molecular sciences · 2026
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  20. Research square · 2026
    Article

119 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Margaret AlexanderDepartment of Microbiology & Immunology, University of California San Francisco, San Francisco, CA 94143, USA.
Qi Yan AngDepartment of Microbiology & Immunology, University of California San Francisco, San Francisco, CA 94143, USA.
Renuka R NayakDepartment of Microbiology & Immunology, University of California San Francisco, San Francisco, CA 94143, USA; Department of Medicine, University of California, San Francisco, San Francisco, CA 94158, USA.
Annamarie E BustionGladstone Institutes, San Francisco, CA 94158, USA.
Moriah SandyDepartment of Microbiology & Immunology, University of California San Francisco, San Francisco, CA 94143, USA; Department of Medicine, University of California, San Francisco, San Francisco, CA 94158, USA.
Bing ZhangDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94158, USA.
Vaibhav UpadhyayDepartment of Microbiology & Immunology, University of California San Francisco, San Francisco, CA 94143, USA; Department of Medicine, University of California, San Francisco, San Francisco, CA 94158, USA.
Katherine S PollardGladstone Institutes, San Francisco, CA 94158, USA; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA; Department of Epidemiology and Biostatistics, University of California San Francisco, San Francisco, CA 94158, USA.
Susan V LynchDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94158, USA.
Peter J TurnbaughDepartment of Microbiology & Immunology, University of California San Francisco, San Francisco, CA 94143, USA. Electronic address: peter.turnbaugh@ucsf.edu.
University of California, San Francisco · USGladstone Institutes · US

Funding

MUTIDISCIPLINARY TRAINING PROGRAM IN LUNG DISEASEST32HL007185 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI David J Erle, LAURENCE HUANG · 1985 to 2026
$24.6M
Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GERMAN, MICHAEL S · 2003 to 2019
$21.8M
NRSA Training CoreTL1TR001871 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KANAYA, ALKA M., SOMSOUK, MA · 2016 to 2025
$10.1M
PHARMACEUTICAL SCIENCES AND PHARMACOGENOMICST32GM007175 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, KROETZ, DEANNA L · 1985 to 2021
$7.1M
Microbial Pathogenesis and Host DefenseT32AI060537 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joanne N. Engel · 2004 to 2026
$6.5M
Predicting and preventing drug metabolism by the human gut microbiomeR01HL122593 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Peter James Turnbaugh · 2016 to 2026
$5.7M
Employing the gut microbiome to accelerate effective initiation of rheumatoid arthritis therapyR01AR074500 · NIAMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Renuka Rajendra Nayak, Jose U. Scher · 2019 to 2026
$4.1M
Host-microbiome interactions shape the metabolic effects of ketogenic dietsR01DK114034 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI TURNBAUGH, PETER JAMES · 2020 to 2024
$2.5M
The impact of the gut microbiome on rheumatoid arthritis treatmentK08AR073930 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI NAYAK, RENUKA RAJENDRA · 2018 to 2022
$981k
(PQ10) Harnessing the human gut microbiome to predict chemotherapy outcomesR21CA227232 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ATREYA, CHLOE E., TURNBAUGH, PETER JAMES · 2018 to 2019
$378k
Using diet to alter immune manipulation by Eggerthella lenta metabolites: eating away at autoimmunityF32AI147456 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ALEXANDER, MARGARET ROSE · 2019 to 2020
$127k
NCATS NIH HHS TL1 TR001871NCI NIH HHS R21 CA227232NHLBI NIH HHS R01 HL122593NHLBI NIH HHS T32 HL007185NIAID NIH HHS F32 AI147456NIAID NIH HHS T32 AI060537NIAMS NIH HHS K08 AR073930NIAMS NIH HHS R01 AR074500NIDDK NIH HHS P30 DK063720NIDDK NIH HHS R01 DK114034NIGMS NIH HHS T32 GM007175
6 · The paper itself

Abstract

Bacterial activation of T helper 17 (Th17) cells exacerbates mouse models of autoimmunity, but how human-associated bacteria impact Th17-driven disease remains elusive. We show that human gut Actinobacterium Eggerthella lenta induces intestinal Th17 activation by lifting inhibition of the Th17 transcription factor Rorγt through cell- and antigen-independent mechanisms. E. lenta is enriched in inflammatory bowel disease (IBD) patients and worsens colitis in a Rorc-dependent manner in mice. Th17 activation varies across E. lenta strains, which is attributable to the cardiac glycoside reductase 2 (Cgr2) enzyme. Cgr2 is sufficient to induce interleukin (IL)-17a, a major Th17 cytokine. cgr2+ E. lenta deplete putative steroidal glycosides in pure culture; related compounds are negatively associated with human IBD severity. Finally, leveraging the sensitivity of Cgr2 to dietary arginine, we prevented E. lenta-induced intestinal inflammation in mice. Together, these results support a role for human gut bacterial metabolism in driving Th17-dependent autoimmunity.

Indexed as

ActinobacteriaAnimalsBacteriaColitisCytokinesDietary SupplementsDisease Models, AnimalFemaleGastrointestinal MicrobiomeHumansInflammatory Bowel DiseasesInterleukin-17Lymphocyte ActivationMaleMiceMice, Inbred C57BLCytokinesIL17A protein, humanInterleukin-17Nuclear Receptor Subfamily 1, Group F, Member 3RORC protein, humanautoimmune diseasedietary supplementationhuman gut microbiomeinflammatory bowel diseasemicrobial metabolismT helper 17 cells

Identifiers

PMID34822777
PMCPMC8785648
OpenAlexW3215646557

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.