Evidence map›Paper›PMID 34822292›Full record

ArticleScience (New York, N.Y.)2021

A ubiquitous disordered protein interaction module orchestrates transcription elongation.

Katerina Cermakova, Jonas Demeulemeester, Vanda Lux, Monika Nedomova, Seth R Goldman, Eric A Smith, Pavel Srb, Rozalie Hexnerova, Milan Fabry, Marcela Madlikova and 6 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. LUMINIDEPENDENS orchestrates global transcriptional repression inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Transcription regulation by biomolecular condensates.Nature reviews. Molecular cell biology · 2025
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Katerina Cermakova *Center for Precision Environmental Health, Department of Molecular and Cellular Biology, and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0003-3006-2213
Jonas Demeulemeester *Molecular Virology and Gene Therapy, KU Leuven, Leuven, Flanders, Belgium.ORCID 0000-0002-2660-2478
Vanda Lux *Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0002-0184-8076
Monika NedomovaInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0002-7327-9917
Seth R GoldmanDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-5096-3778
Eric A SmithCenter for Precision Environmental Health, Department of Molecular and Cellular Biology, and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-8147-6179
Pavel SrbInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0002-4562-578X
Rozalie HexnerovaInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0002-3537-8439
Milan FabryInstitute of Molecular Genetics of the Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0001-7857-4213
Marcela MadlikovaInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.
Magdalena HorejsiInstitute of Molecular Genetics of the Czech Academy of Sciences, Prague, Czech Republic.
Jan De RijckMolecular Virology and Gene Therapy, KU Leuven, Leuven, Flanders, Belgium.
Zeger DebyserMolecular Virology and Gene Therapy, KU Leuven, Leuven, Flanders, Belgium.ORCID 0000-0002-3982-1565
Karen AdelmanDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.ORCID 0000-0001-5364-334X
H Courtney HodgesCenter for Precision Environmental Health, Department of Molecular and Cellular Biology, and Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0003-4441-497X
Vaclav VeverkaInstitute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.ORCID 0000-0003-3782-5279

Funding

Novel cellular regulatory mechanisms governing SWI/SNF activityR35GM137996 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Hamilton Courtney Hodges · 2020 to 2026
$2.9M
Training in Precision Environmental Health SciencesT32ES027801 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Cheryl L. Walker · 2018 to 2026
$2.8M
NIEHS NIH HHS T32 ES027801NIGMS NIH HHS R35 GM137996
6 · The paper itself

Abstract

During eukaryotic transcription elongation, RNA polymerase II (RNAP2) is regulated by a chorus of factors. Here, we identified a common binary interaction module consisting of TFIIS N-terminal domains (TNDs) and natively unstructured TND-interacting motifs (TIMs). This module was conserved among the elongation machinery and linked complexes including transcription factor TFIIS, Mediator, super elongation complex, elongin, IWS1, SPT6, PP1-PNUTS phosphatase, H3K36me3 readers, and other factors. Using nuclear magnetic resonance, live-cell microscopy, and mass spectrometry, we revealed the structural basis for these interactions and found that TND-TIM sequences were necessary and sufficient to induce strong and specific colocalization in the crowded nuclear environment. Disruption of a single TIM in IWS1 induced robust changes in gene expression and RNAP2 elongation dynamics, which underscores the functional importance of TND-TIM surfaces for transcription elongation.

Indexed as

Transcription Elongation, GeneticAdaptor Proteins, Signal TransducingCell Line, TumorDNA-Binding ProteinsGene ExpressionHumansIntrinsically Disordered ProteinsModels, MolecularMutationProtein BindingProtein DomainsProtein Interaction Domains and MotifsProtein Interaction MapsRNA-Binding ProteinsRNA Polymerase IITranscriptional Elongation FactorsAdaptor Proteins, Signal TransducingDNA-Binding ProteinsIntrinsically Disordered ProteinsIws1 protein, humanPPP1R10 protein, humanPSIP1 protein, humanRNA-Binding ProteinsRNA Polymerase IITranscriptional Elongation FactorsTranscription Factorstranscription factor S-II

Identifiers

PMID34822292
PMCPMC8943916

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.