Evidence map›Paper›PMID 34821217›Full record

ArticleeLife2021

Reversible phosphorylation of cyclin T1 promotes assembly and stability of P-TEFb.

Fang Huang, Trang Tt Nguyen, Ignacia Echeverria, Ramachandran Rakesh, Daniele C Cary, Hana Paculova, Andrej Sali, Arthur Weiss, Boris Matija Peterlin, Koh Fujinaga

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
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  9. A CRISPR screen of HIV dependency factors revealsbioRxiv : the preprint server for biology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Fang HuangDepartments of Medicine, Microbiology and Immunology, University of California, San Francisco, San Francisco, United States.ORCID https://orcid.org/0000-0002-0511-2568
Trang Tt NguyenDepartments of Medicine, Microbiology and Immunology, University of California, San Francisco, San Francisco, United States.
Ignacia EcheverriaDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States.ORCID https://orcid.org/0000-0003-4717-1467
Ramachandran RakeshDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States.
Daniele C CaryDepartments of Medicine, Microbiology and Immunology, University of California, San Francisco, San Francisco, United States.
Hana PaculovaDepartments of Medicine, Microbiology and Immunology, University of California, San Francisco, San Francisco, United States.
Andrej SaliDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States.ORCID https://orcid.org/0000-0003-0435-6197
Arthur WeissDepartments of Medicine, Microbiology and Immunology, University of California, San Francisco, San Francisco, United States.ORCID https://orcid.org/0000-0002-2414-9024
Boris Matija PeterlinDepartments of Medicine, Microbiology and Immunology, University of California, San Francisco, San Francisco, United States.ORCID https://orcid.org/0000-0003-3692-219X
Koh FujinagaDepartments of Medicine, Microbiology and Immunology, University of California, San Francisco, San Francisco, United States.ORCID https://orcid.org/0000-0003-4242-9078
University of California, San Francisco · USQB3 · USHoward Hughes Medical Institute · US

Funding

X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KROGAN, NEVAN J · 2007 to 2018
$48.8M
Understand the metabolic fitness of naïve T cellsP01AI091580 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JEROEN ROOSE · 2011 to 2026
$31.1M
TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
X-ray Screening and Rapid Structure DeterminationP50AI150476 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI EMERMAN, MICHAEL · 2019 to 2021
$14.4M
TAT TransactivationR01AI049104 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PETERLIN, BORIS MATIJA · 2001 to 2015
$5.3M
TAT TransactivationR01AI125104 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PETERLIN, BORIS MATIJA · 2016 to 2020
$2.0M
Howard Hughes Medical InstituteNIAID NIH HHS P01 AI091580NIAID NIH HHS P50 AI150476NIAID NIH HHS R01 AI049104NIAID NIH HHS R01 AI125104NIGMS NIH HHS P41 GM109824NIGMS NIH HHS P50 GM082250
6 · The paper itself

Abstract

The positive transcription elongation factor b (P-TEFb) is a critical coactivator for transcription of most cellular and viral genes, including those of HIV. While P-TEFb is regulated by 7SK snRNA in proliferating cells, P-TEFb is absent due to diminished levels of CycT1 in quiescent and terminally differentiated cells, which has remained unexplored. In these cells, we found that CycT1 not bound to CDK9 is rapidly degraded. Moreover, productive CycT1:CDK9 interactions are increased by PKC-mediated phosphorylation of CycT1 in human cells. Conversely, dephosphorylation of CycT1 by PP1 reverses this process. Thus, PKC inhibitors or removal of PKC by chronic activation results in P-TEFb disassembly and CycT1 degradation. This finding not only recapitulates P-TEFb depletion in resting CD4+ T cells but also in anergic T cells. Importantly, our studies reveal mechanisms of P-TEFb inactivation underlying T cell quiescence, anergy, and exhaustion as well as proviral latency and terminally differentiated cells.

Indexed as

PhosphorylationCyclin-Dependent Kinase 9Cyclin THEK293 CellsHumansJurkat CellsPositive Transcriptional Elongation Factor BT-LymphocytesCyclin-Dependent Kinase 9Cyclin TPositive Transcriptional Elongation Factor Banergybiochemistrychemical biologychromosomesexhaustiongene expressionhumanmousephosphorylationPKCPP1P-TEFbtranscription

Identifiers

PMID34821217
PMCPMC8648303
OpenAlexW3217127402

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.