Evidence map›Paper›PMID 34820668›Full record

ArticleJournal of mass spectrometry and advances in the clinical lab2021

Direct detection of OXA-48-like carbapenemase variants with and without co-expression of an extended-spectrum β-lactamase from bacterial cell lysates using mass spectrometry.

William M McGee, Arvind Verma, Marjaana Viirtola, Scott R Kronewitter, Jason R Neil, James L Stephenson

Open access · goldAbstract read
In one paragraph

Article in Journal of mass spectrometry and advances in the clinical lab, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 63% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

William M McGeeThermo Fisher Scientific, Cambridge, MA, USA.
Arvind VermaThermo Fisher Scientific, Vantaa, Finland.
Marjaana ViirtolaThermo Fisher Scientific, Vantaa, Finland.
Scott R KronewitterThermo Fisher Scientific, Cambridge, MA, USA.
Jason R NeilThermo Fisher Scientific, Cambridge, MA, USA.
James L StephensonThermo Fisher Scientific, Cambridge, MA, USA.
Thermo Fisher Scientific (United States) · USThermo Fisher Scientific (Finland) · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionAntibiotic-resistant Gram-negative bacteria are of a growing concern globally, especially those producing enzymes conferring resistance. OXA-48-like carbapenemases hydrolyze most β-lactam antibiotics, with typically low-level hydrolysis of carbapenems, but have limited effect on broad-spectrum cephalosporins. These are frequently co-expressed with extended spectrum β-lactamases, especially CTX-M-15, which typically shows high level resistance to broad-spectrum cephalosporins, yet is carbapenem susceptible. The combined resistance profile makes the need for successful detection of these specific resistance determinants imperative for effective antibiotic therapy.

objectivesThe objective of this study is to detect and identify OXA-48-like and CTX-M-15 enzymes using mass spectrometry, and to subsequently develop a method for detection of both enzyme types in combination with liquid chromatography.

methodsCells grown in either broth or on agar were harvested, lysed, and, in some cases buffer-exchanged. Lysates produced from bacterial cells were separated and analyzed via liquid chromatography with mass spectrometry (LC-MS) and tandem mass spectrometry (LC-MS/MS).

resultsThe intact proteins of OXA-48, OXA-181, and OXA-232 (collectively OXA-48-like herein) and CTX-M-15 were characterized and detected. Acceptance criteria based on sequence-informative fragments from each protein group were established as confirmatory markers for the presence of the protein(s). A total of 25 isolates were successfully tested for OXA-48 like (2), CTX-M-15 (3), or expression of both (7) enzymes. Thirteen isolates served as negative controls.

conclusionsHere we present a method for the direct and independent detection of both OXA-48-like carbapenemases and CTX-M-15 β-lactamases using LC-MS/MS. The added sensitivity of MS/MS allows for simultaneous detection of at least two co-eluting, co-isolated and co-fragmented proteins from a single mass spectrum.

Indexed as

Antimicrobial-resistant organismsATCC, American Type Culture CollectionCarbapenemaseCarbapenemase-producing organismsCarbapenem-resistant EnterobacteralesCDC, Centers for Disease Control and PreventionCPO, carbapenemase-producing organismCRE, carbapenem-resistant EnterobacteralesCSD, charge state distributionCTX-M-15ESBL, extended-spectrum β-lactamaseESI, electrospray ionizationLC, liquid chromatographyLiquid chromatographyMALDI, matrix-assisted laser desorption ionizationMass SpectrometryMS, mass spectrometryMS/MS, tandem mass spectrometryMW, molecular weightm/z, mass-to-charge ratioOXA-48OXA-48-likePCR, polymerase chain reactionTandem mass spectrometryTOF, time-of-flight (mass spectrometry)β-Lactamase

Identifiers

PMID34820668
PMCPMC8601005
OpenAlexW3171097275

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.