Evidence map›Paper›PMID 34818333›Full record

ArticlePLoS computational biology2021

Deciphering conformational selectivity in the A2A adenosine G protein-coupled receptor by free energy simulations.

Willem Jespers, Laura H Heitman, Adriaan P IJzerman, Eddy Sotelo, Gerard J P van Westen, Johan Åqvist, Hugo Gutiérrez-de-Terán

Abstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Alchemical Free Energy Calculations on Membrane-Associated Proteins.Journal of chemical theory and computation · 2023
    Review
  3. Cancer-Associated Mutations of the Adenosine AMolecules (Basel, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Willem JespersDepartment of Cell and Molecular Biology, Uppsala University, Biomedical Center (BMC), Uppsala, Sweden.ORCID 0000-0002-4951-9220
Laura H HeitmanDrug Discovery and Safety, Leiden Academic Centre for Drug Research, Leiden, The Netherlands.ORCID 0000-0002-1381-8464
Adriaan P IJzermanDrug Discovery and Safety, Leiden Academic Centre for Drug Research, Leiden, The Netherlands.
Eddy SoteloCentro Singular de Investigación en Química Biolóxica y Materiais Moleculares (CIQUS), Santiago de Compostela, Spain.
Gerard J P van WestenDrug Discovery and Safety, Leiden Academic Centre for Drug Research, Leiden, The Netherlands.
Johan ÅqvistDepartment of Cell and Molecular Biology, Uppsala University, Biomedical Center (BMC), Uppsala, Sweden.ORCID 0000-0003-2091-0610
Hugo Gutiérrez-de-TeránDepartment of Cell and Molecular Biology, Uppsala University, Biomedical Center (BMC), Uppsala, Sweden.ORCID 0000-0003-0459-3491

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transmembranal G Protein-Coupled Receptors (GPCRs) transduce extracellular chemical signals to the cell, via conformational change from a resting (inactive) to an active (canonically bound to a G-protein) conformation. Receptor activation is normally modulated by extracellular ligand binding, but mutations in the receptor can also shift this equilibrium by stabilizing different conformational states. In this work, we built structure-energetic relationships of receptor activation based on original thermodynamic cycles that represent the conformational equilibrium of the prototypical A2A adenosine receptor (AR). These cycles were solved with efficient free energy perturbation (FEP) protocols, allowing to distinguish the pharmacological profile of different series of A2AAR agonists with different efficacies. The modulatory effects of point mutations on the basal activity of the receptor or on ligand efficacies could also be detected. This methodology can guide GPCR ligand design with tailored pharmacological properties, or allow the identification of mutations that modulate receptor activation with potential clinical implications.

Indexed as

Adenosine A2 Receptor AgonistsAdenosine A2 Receptor AntagonistsAmino Acid SubstitutionComputational BiologyHumansLigandsModels, MolecularMolecular Dynamics SimulationPoint MutationProtein ConformationReceptor, Adenosine A2AThermodynamicsAdenosine A2 Receptor AgonistsAdenosine A2 Receptor AntagonistsADORA2A protein, humanLigandsReceptor, Adenosine A2A

Identifiers

PMID34818333
PMCPMC8654218

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.