Evidence map›Paper›PMID 34817803›Full record

ArticleInterdisciplinary sciences, computational life sciences2022

Consistent Clustering Pattern of Prokaryotic Genes Based on Base Frequency at the Second Codon Position and its Association with Functional Category Preference.

Yan-Ting Jin, Cong Ma, Xin Wang, Shu-Xuan Wang, Kai-Yue Zhang, Wen-Xin Zheng, Zixin Deng, Ju Wang, Feng-Biao Guo

Abstract read
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In one paragraph

Article in Interdisciplinary sciences, computational life sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yan-Ting JinSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 611731, China.
Cong MaSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 611731, China.
Xin WangSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 611731, China.
Shu-Xuan WangSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 611731, China.
Kai-Yue ZhangSchool of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 611731, China.
Wen-Xin ZhengSchool of Biomedical Engineering, Capital Medical University in Beijing, Beijing, 100069, China.
Zixin DengKey Laboratory of Combinatorial Biosynthesis and Drug Discovery, Ministry of Education and School of Pharmaceutical Sciences, Wuhan University, Wuhan, 430071, China.
Ju WangSchool of Biomedical Engineering, Tianjin Medical University, Tianjin, 300070, China. wangju@tmu.edu.cn.
Feng-Biao GuoKey Laboratory of Combinatorial Biosynthesis and Drug Discovery, Ministry of Education and School of Pharmaceutical Sciences, Wuhan University, Wuhan, 430071, China. fbguoy@whu.edu.cn.ORCID http://orcid.org/0000-0002-1129-5233

Funding

National Natural Science Foundation of China 31871335Natural Science Foundation of Beijing Municipality BJNSF 5182006
6 · The paper itself

Abstract

In 2002, our research group observed a gene clustering pattern based on the base frequency of A versus T at the second codon position in the genome of Vibrio cholera and found that the functional category distribution of genes in the two clusters was different. With the availability of a large number of sequenced genomes, we performed a systematic investigation of A

Indexed as

ProteinsBase SequenceCluster AnalysisCodonCodonProteinsA2 versus T2Base frequencyProtein function preferenceThe second codon positionTwo unequal clusters

Identifiers

PMID34817803
PMCPMC9124167

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.