Evidence map›Paper›PMID 34817777›Full record

ArticleMolecular biology reports2022

Human sorting nexin 2 protein interacts with Influenza A virus PA protein and has a negative regulatory effect on the virus replication.

Tuğba Koçmar, Elif Çağlayan, Erkan Rayaman, Kyosuke Nagata, Kadir Turan

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biology reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. PA and PA-X: two key proteins from segment 3 of the influenza viruses.Frontiers in cellular and infection microbiology · 2025
    Review
  5. Article
  6. Article
  7. Characterization of the First Secreted Sorting Nexin Identified in theInternational journal of molecular sciences · 2024
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Tuğba KoçmarInstitute of Health Sciences, Marmara University, Istanbul, Turkey.ORCID http://orcid.org/0000-0002-7831-0725
Elif ÇağlayanUniversity of Health Sciences Kartal Koşuyolu High Speciality Educational and Research Hospital, Istanbul, Turkey.ORCID http://orcid.org/0000-0002-4249-0824
Erkan RayamanDepartment of Pharmaceutical Microbiology, Faculty of Pharmacy, Marmara University, Istanbul, Turkey.ORCID http://orcid.org/0000-0002-1261-3942
Kyosuke NagataDepartment of Infection Biology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, Tsukuba, Japan.ORCID http://orcid.org/0000-0003-2522-3561
Kadir TuranDepartment of Basic Pharmaceutical Sciences, Faculty of Pharmacy, Marmara University, Istanbul, Turkey. kadirturan@marmara.edu.tr.ORCID http://orcid.org/0000-0003-4175-3423
Marmara University · TRSağlık Bilimleri Üniversitesi · TRUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundReplication of the influenza A viruses occurs in the cells through the viral RdRP consisting of PB1, PB2, and PA. Several cellular proteins are involved in these processes. This study aims to reveal the interaction between human SNX2 protein and the PA protein and the effects of the SNX2 on the virus replication.

resultsTo identify potential host interacting proteins to the PA, yeast two-hybrid assay was carried out with HEK293 cell cDNA library and the PA as a bait. We focused on SNX2 protein, which interacts with the PA in the yeast cells. By using the co-immunoprecipitation assays, it has been demonstrated that the amino-terminal part of the PA was important for binding to the SNX2. Immunolocalization of the proteins in HeLa cells supported this interaction. Knockdown of the SNX2 with siRNA in the cells resulted in a significant increase in both viral transcripts and virus growth. However, the increase of SNX2 in transfected cells didn't cause a significant change in the viral RdRP activity in minireplicon assay. This may suggest that the negative effect of SNX2 on the virus replication could be saturated with its authentic intra-cellular amount.

conclusionsThis study revealed that the SNX2 and PA protein interact with each other in both yeast and HEK293 cells, and the SNX2 has a negative regulatory function on the virus replication. However, more knowledge is required to elucidate the action mechanism of the SNX2 on the influenza A virus replication at the molecular level.

Indexed as

Host-Pathogen InteractionsVirus ReplicationCells, CulturedGene Knockdown TechniquesHEK293 CellsHeLa CellsHumansInfluenza A virusInfluenza, HumanProtein BindingProtein Interaction Domains and MotifsRNA-Dependent RNA PolymeraseSorting NexinsTwo-Hybrid System TechniquesViral ProteinsPA protein, influenza virusesRNA-Dependent RNA PolymeraseSNX2 protein, humanSorting NexinsViral ProteinsInfluenza a virusesInfluenza PA proteinInfluenza RdRPSNX2

Identifiers

PMID34817777
PMCPMC8611637
OpenAlexW3166137872

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.