Evidence map›Paper›PMID 34817767›Full record

ArticlePlant molecular biology2021

The complete plastid genome sequence of the enigmatic moss, Takakia lepidozioides (Takakiopsida, Bryophyta): evolutionary perspectives on the largest collection of genes in mosses and the intensive RNA editing.

Atsushi Sadamitsu, Yuya Inoue, Keiko Sakakibara, Hiromi Tsubota, Tomio Yamaguchi, Hironori Deguchi, Tomoaki Nishiyama, Masaki Shimamura

Abstract read
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In one paragraph

Article in Plant molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Plants (Basel, Switzerland) · 2025
    Article
  5. Complete chloroplast genomes of threeFrontiers in plant science · 2025
    Article
  6. Article
  7. Review
  8. Characterization of the complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024
    Article
  9. Article
  10. Molecular biology of mosses.Plant molecular biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Atsushi SadamitsuGraduate School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-hiroshima, Hiroshima, 739-8526, Japan.
Yuya InoueDepartment of Botany, National Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba, Ibaraki, 305-0005, Japan.
Keiko SakakibaraDepartment of Life Science, Rikkyo University, 3-34-1 Nishi-Ikebukuro, Toshima-ku, Tokyo, 171-8501, Japan.
Hiromi TsubotaMiyajima Natural Botanical Garden, Graduate School of Integrated Sciences for Life, Hiroshima University, 1156-2, Mitsumaruko-yama, Miyajima-cho, Hatsukaichi, Hiroshima, 739-0543, Japan.
Tomio YamaguchiGraduate School of Integrated Sciences for Life, Hiroshima University, 1-3-1 Kagamiyama, Higashi-hiroshima, Hiroshima, 739-8526, Japan.
Hironori DeguchiGraduate School of Integrated Sciences for Life, Hiroshima University, 1-3-1 Kagamiyama, Higashi-hiroshima, Hiroshima, 739-8526, Japan.
Tomoaki NishiyamaResearch Center for Experimental Modeling of Human Disease, Kanazawa University, Kanazawa, 920-0934, Japan.ORCID http://orcid.org/0000-0003-1279-7806
Masaki ShimamuraGraduate School of Integrated Sciences for Life, Hiroshima University, 1-3-1 Kagamiyama, Higashi-hiroshima, Hiroshima, 739-8526, Japan. mshima@hiroshima-u.ac.jp.ORCID http://orcid.org/0000-0002-5665-5116
Hiroshima University · JPKanazawa University · JPRikkyo University · JPUniversity of Miyazaki · JP

Funding

Japan Society for the Promotion of Science 23370045Japan Society for the Promotion of Science 26291081
6 · The paper itself

Abstract

key messageComplete chloroplast genome sequence of a moss, Takakia lepidozioides (Takakiopsida) is reported. The largest collection of genes in mosses and the intensive RNA editing were discussed from evolutionary perspectives. We assembled the entire plastid genome sequence of Takakia lepidozioides (Takakiopsida), emerging from the first phylogenetic split among extant mosses. The genome sequences were assembled into a circular molecule 149,016 bp in length, with a quadripartite structure comprising a large and a small single-copy region separated by inverted repeats. It contained 88 genes coding for proteins, 32 for tRNA, four for rRNA, two open reading frames, and at least one pseudogene (tufA). This is the largest number of genes of all sequenced plastid genomes in mosses and Takakia is the only moss that retains the seven coding genes ccsA, cysA, cysT, petN rpoA, rps16 and trnP

Indexed as

Evolution, MolecularRNA EditingBryophytaChloroplast ProteinsChloroplastsGenes, ChloroplastGenetic VariationGenome, PlastidMutationPhylogenyPlant LeavesRhizomeRNA-SeqSpecies SpecificityWhole Genome SequencingChloroplast ProteinsBryophytesMonoplastidyMossPlastid genomeRNA editingTakakia lepidozioides

Identifiers

PMID34817767
OpenAlexW3215313768

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.