Evidence map›Paper›PMID 34816457›Full record

ArticleLetters in applied microbiology2022

Increased Agrobacterium-mediated transformation of Saccharomyces cerevisiae after deletion of the yeast ADA2 gene.

M R Roushan, S Shao, I Poledri, P J J Hooykaas, G P H van Heusden

Open access · hybridAbstract read
In one paragraph

Article in Letters in applied microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Practical Approaches for the YeastInternational journal of molecular sciences · 2023
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

M R RoushanInstitute of Biology, Leiden University, Leiden, The Netherlands.
S ShaoInstitute of Biology, Leiden University, Leiden, The Netherlands.
I PoledriInstitute of Biology, Leiden University, Leiden, The Netherlands.
P J J HooykaasInstitute of Biology, Leiden University, Leiden, The Netherlands.
G P H van HeusdenInstitute of Biology, Leiden University, Leiden, The Netherlands.ORCID https://orcid.org/0000-0002-6422-8034
Leiden University · NL

Funding

China Scholarship Council 201406740044Koninklijke Nederlandse Akademie van Wetenschappen
6 · The paper itself

Abstract

Agrobacterium tumefaciens is the causative agent of crown gall disease and is widely used as a vector to create transgenic plants. Under laboratory conditions, the yeast Saccharomyces cerevisiae and other yeasts and fungi can also be transformed, and Agrobacterium-mediated transformation (AMT) is now considered the method of choice for genetic transformation of many fungi. Unlike plants, in S. cerevisiae, T-DNA is integrated preferentially by homologous recombination and integration by non-homologous recombination is very inefficient. Here we report that upon deletion of ADA2, encoding a component of the ADA and SAGA transcriptional adaptor/histone acetyltransferase complexes, the efficiency of AMT significantly increased regardless of whether integration of T-DNA was mediated by homologous or non-homologous recombination. This correlates with an increase in double-strand DNA breaks, the putative entry sites for T-DNA, in the genome of the ada2Δ deletion mutant, as visualized by the number of Rad52-GFP foci. Our observations may be useful to enhance the transformation of species that are difficult to transform.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAgrobacterium tumefaciensTranscription FactorsTransformation, GeneticADA2 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factorsbiotechnologyfungirhizobiatransformationyeasts

Identifiers

PMID34816457
PMCPMC9299121
OpenAlexW3216195741

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.