Evidence map›Paper›PMID 34815415›Full record

ArticleScientific reports2021

The encapsulin from Thermotoga maritima is a flavoprotein with a symmetry matched ferritin-like cargo protein.

Benjamin J LaFrance, Caleb Cassidy-Amstutz, Robert J Nichols, Luke M Oltrogge, Eva Nogales, David F Savage

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 37 citations in OpenAlex.

  1. Chemical reviews · 2026
    Review
  2. Article
  3. Review
  4. Encapsulins: catalysis inside a shell.Current opinion in microbiology · 2025
    Review
  5. Article
  6. Article
  7. The Structural Diversity of Encapsulin Protein Shells.Chembiochem : a European journal of chemical biology · 2024
    Review
  8. Bacterial Organelles in Iron Physiology.Molecular microbiology · 2024
    Review
  9. Structural Characterization ofMicroorganisms · 2024
    Article
  10. Article
  11. Encapsulation of Transketolase intoACS applied bio materials · 2024
    Article
  12. Review
  13. Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Structure and heterogeneity of a highly cargo-loaded encapsulin shell.bioRxiv : the preprint server for biology · 2023
    Article
  18. Article
  19. Review
  20. Encapsulins.Annual review of biochemistry · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Benjamin J LaFrance *Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA, USA.
Caleb Cassidy-Amstutz *Department of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA, USA.
Robert J NicholsDepartment of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA, USA.
Luke M OltroggeDepartment of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA, USA.
Eva NogalesDepartment of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA, USA.
David F SavageDepartment of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA, USA. savage@berkeley.edu.
University of California, Berkeley · USLawrence Berkeley National Laboratory · US

Funding

Howard Hughes Medical InstituteNational Science Foundation, Graduate Student Research Fellowship 1106400U.S. Department of Energy DE-SC00016240
6 · The paper itself

Abstract

Bacterial nanocompartments, also known as encapsulins, are an emerging class of protein-based 'organelles' found in bacteria and archaea. Encapsulins are virus-like icosahedral particles comprising a ~ 25-50 nm shell surrounding a specific cargo enzyme. Compartmentalization is thought to create a unique chemical environment to facilitate catalysis and isolate toxic intermediates. Many questions regarding nanocompartment structure-function remain unanswered, including how shell symmetry dictates cargo loading and to what extent the shell facilitates enzymatic activity. Here, we explore these questions using the model Thermotoga maritima nanocompartment known to encapsulate a redox-active ferritin-like protein. Biochemical analysis revealed the encapsulin shell to possess a flavin binding site located at the interface between capsomere subunits, suggesting the shell may play a direct and active role in the function of the encapsulated cargo. Furthermore, we used cryo-EM to show that cargo proteins use a form of symmetry-matching to facilitate encapsulation and define stoichiometry. In the case of the Thermotoga maritima encapsulin, the decameric cargo protein with fivefold symmetry preferentially binds to the pentameric-axis of the icosahedral shell. Taken together, these observations suggest the shell is not simply a passive barrier-it also plays a significant role in the structure and function of the cargo enzyme.

Indexed as

Bacterial ProteinsCryoelectron MicroscopyDinitrocresolsFerritinsFlavoproteinsIronModels, MolecularThermotoga maritima4,6-dinitro-o-cresolBacterial ProteinsDinitrocresolsFerritinsFlavoproteinsIron

Identifiers

PMID34815415
PMCPMC8610991
OpenAlexW3215654295

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.