Evidence map›Paper›PMID 34815312›Full record

ArticleCancer prevention research (Philadelphia, Pa.)2022

Single-cell RNA Sequencing Reveals How the Aryl Hydrocarbon Receptor Shapes Cellular Differentiation Potency in the Mouse Colon.

Yongjian Yang, Daniel Osorio, Laurie A Davidson, Huajun Han, Destiny A Mullens, Arul Jayaraman, Stephen Safe, Ivan Ivanov, James J Cai, Robert S Chapkin

Open access · bronzeAbstract read
In one paragraph

Article in Cancer prevention research (Philadelphia, Pa.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Yongjian YangDepartment of Electrical & Computer Engineering, Texas A&M University, College Station, Texas.ORCID 0000-0002-4135-5014
Daniel OsorioDepartment of Veterinary Integrative Biosciences, Texas A&M University College of Veterinary Medicine and Biomedical Sciences, College Station, Texas.
Laurie A DavidsonDepartment of Nutrition, Texas A&M University, College Station, Texas.ORCID 0000-0002-4159-4680
Huajun HanProgram in Integrative Nutrition & Complex Diseases, Texas A&M University, College Station, Texas.
Destiny A MullensProgram in Integrative Nutrition & Complex Diseases, Texas A&M University, College Station, Texas.ORCID 0000-0001-7379-6386
Arul JayaramanDepartment of Chemical Engineering, Texas A&M University, College Station, Texas.
Stephen SafeDepartment of Veterinary Physiology & Pharmacology, Texas A&M University College of Veterinary Medicine and Biomedical Sciences, College Station, Texas.ORCID 0000-0002-2115-3060
Ivan IvanovDepartment of Veterinary Pathobiology, Texas A&M University College of Veterinary Medicine and Biomedical Sciences, College Station, Texas.ORCID 0000-0002-5323-8325
James J CaiDepartment of Electrical & Computer Engineering, Texas A&M University, College Station, Texas.
Robert S ChapkinDepartment of Nutrition, Texas A&M University, College Station, Texas. r-chapkin@tamu.edu.ORCID 0000-0002-6515-3898
Texas A&M University · USTexas College · US

Funding

Texas A&M Center for Environmental Health Research (TiCER)P30ES029067 · NIEHS · TEXAS A&M UNIVERSITY · PI Galen Newman · 2019 to 2026
$13.0M
Plasma membrane therapy: Disruption of Wnt associated receptor spatiotemporal organization by membrane targeted dietary bioactives (MTDB)R35CA197707 · NCI · TEXAS A&M AGRILIFE RESEARCH · PI CHAPKIN, ROBERT STEPHEN · 2016 to 2022
$6.3M
Diet induced modifications of microbiota metabolites in colon tumorigenesisR01CA202697 · NCI · TEXAS A&M AGRILIFE RESEARCH · PI ALLRED, CLINTON D, CHAPKIN, ROBERT STEPHEN · 2016 to 2020
$2.0M
Role of Aryl Hydrocarbon Receptor in Microbiota-Colon Stem Cell InteractionsR01ES025713 · NIEHS · TEXAS A&M AGRILIFE RESEARCH · PI CHAPKIN, ROBERT STEPHEN, JAYARAMAN, ARUL · 2016 to 2020
$2.0M
Microbial flavonoid metabolites as modulators of AD markers in a 3D human neural tissue modelR01AT010282 · NCCIH · TEXAS A&M AGRILIFE RESEARCH · PI CHAPKIN, ROBERT STEPHEN, JAYARAMAN, ARUL · 2018 to 2021
$1.9M
NCCIH NIH HHS R01 AT010282NCI NIH HHS R01 CA202697NCI NIH HHS R35 CA197707NIEHS NIH HHS P30 ES029067NIEHS NIH HHS R01 ES025713
6 · The paper itself

Abstract

Despite recent progress recognizing the importance of aryl hydrocarbon receptor (Ahr)-dependent signaling in suppressing colon tumorigenesis, its role in regulating colonic crypt homeostasis remains unclear. To assess the effects of Ahr on intestinal epithelial cell heterogeneity and functional phenotypes, we utilized single-cell transcriptomics and advanced analytic strategies to generate a high-quality atlas for colonic intestinal crypts from wild-type and intestinal-specific Ahr knockout mice. Here we observed the promotive effects of Ahr deletion on

Indexed as

ColonReceptors, Aryl HydrocarbonAnimalsCell DifferentiationMiceMice, KnockoutSequence Analysis, RNASingle-Cell AnalysisReceptors, Aryl Hydrocarbon

Identifiers

PMID34815312
PMCPMC8741728
OpenAlexW3216009567

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.