Evidence map›Paper›PMID 34814315›Full record

ArticleMathematical biosciences and engineering : MBE2021

Synthetic data generation with probabilistic Bayesian Networks.

Grigoriy Gogoshin, Sergio Branciamore, Andrei S Rodin

Abstract read
In one paragraph

Article in Mathematical biosciences and engineering : MBE, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Grigoriy GogoshinDepartment of Computational and Quantitative Medicine, Beckman Research Institute, and Diabetes and Metabolism Research Institute, City of Hope National Medical Center, 1500 East Duarte Road, Duarte, CA 91010 USA.
Sergio BranciamoreDepartment of Computational and Quantitative Medicine, Beckman Research Institute, and Diabetes and Metabolism Research Institute, City of Hope National Medical Center, 1500 East Duarte Road, Duarte, CA 91010 USA.
Andrei S RodinDepartment of Computational and Quantitative Medicine, Beckman Research Institute, and Diabetes and Metabolism Research Institute, City of Hope National Medical Center, 1500 East Duarte Road, Duarte, CA 91010 USA.

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI XIWEI WU · 1985 to 2026
$86.3M
Experimental-Computational Synthesis of Altered Immune Signaling in Breast CancerU01CA232216 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI LEE, PETER POON-HANG, ROCKNE, RUSSELL CHRISTIAN · 2019 to 2023
$3.0M
An integrated toolkit combining computational systems biology techniques with molecular dynamics simulations to delineate functionality of GPCRsR01LM013876 · NLM · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI RODIN, ANDREI, VAIDEHI, NAGARAJAN · 2022 to 2025
$1.5M
Scalable Bayesian Network analysis of multimodal FACS and SUMOylation data, with generalization to other big mixed biological datasetsR01LM013138 · NLM · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI RODIN, ANDREI · 2020 to 2022
$776k
NCI NIH HHS P30 CA033572NCI NIH HHS U01 CA232216NLM NIH HHS R01 LM013138NLM NIH HHS R01 LM013876
6 · The paper itself

Abstract

Bayesian Network (BN) modeling is a prominent and increasingly popular computational systems biology method. It aims to construct network graphs from the large heterogeneous biological datasets that reflect the underlying biological relationships. Currently, a variety of strategies exist for evaluating BN methodology performance, ranging from utilizing artificial benchmark datasets and models, to specialized biological benchmark datasets, to simulation studies that generate synthetic data from predefined network models. The last is arguably the most comprehensive approach; however, existing implementations often rely on explicit and implicit assumptions that may be unrealistic in a typical biological data analysis scenario, or are poorly equipped for automated arbitrary model generation. In this study, we develop a purely probabilistic simulation framework that addresses the demands of statistically sound simulations studies in an unbiased fashion. Additionally, we expand on our current understanding of the theoretical notions of causality and dependence / conditional independence in BNs and the Markov Blankets within.

Indexed as

Systems BiologyBayes TheoremComputer SimulationBayesian networkscentral limitDirected Acyclic GraphMarkov blanketprobabilistic graphical modelssynthetic data generation

Identifiers

PMID34814315
PMCPMC8848551

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.