Evidence map›Paper›PMID 34812602›Full record

ArticleAnalytical chemistry2021

UV-adVISor: Attention-Based Recurrent Neural Networks to Predict UV-Vis Spectra.

Fabio Urbina, Kushal Batra, Kevin J Luebke, Jason D White, Daniel Matsiev, Lori L Olson, Jeremiah P Malerich, Maggie A Z Hupcey, Peter B Madrid, Sean Ekins

Abstract read
In one paragraph

Article in Analytical chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Natural Products Dereplication: Databases and Analytical Methods.Progress in the chemistry of organic natural products · 2024
    Review
  9. Article
  10. The Commoditization of AI for Molecule Design.Artificial intelligence in the life sciences · 2022
    Article
  11. Article
  12. Functional Output Regression for Machine Learning in Materials Science.Journal of chemical information and modeling · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Fabio UrbinaCollaborations Pharmaceuticals, Inc., 840 Main Campus Drive, Lab 3510, Raleigh, North Carolina 27606, United States.
Kushal BatraCollaborations Pharmaceuticals, Inc., 840 Main Campus Drive, Lab 3510, Raleigh, North Carolina 27606, United States.
Kevin J LuebkeSRI International, 333 Ravenswood Avenue, Menlo Park, California 94025, United States.
Jason D WhiteSRI International, 333 Ravenswood Avenue, Menlo Park, California 94025, United States.
Daniel MatsievSRI International, 333 Ravenswood Avenue, Menlo Park, California 94025, United States.
Lori L OlsonSRI International, 333 Ravenswood Avenue, Menlo Park, California 94025, United States.
Jeremiah P MalerichSRI International, 333 Ravenswood Avenue, Menlo Park, California 94025, United States.
Maggie A Z HupceyCollaborations Pharmaceuticals, Inc., 840 Main Campus Drive, Lab 3510, Raleigh, North Carolina 27606, United States.
Peter B MadridSRI International, 333 Ravenswood Avenue, Menlo Park, California 94025, United States.ORCID 0000-0002-4895-5610
Sean EkinsCollaborations Pharmaceuticals, Inc., 840 Main Campus Drive, Lab 3510, Raleigh, North Carolina 27606, United States.ORCID 0000-0002-5691-5790

Funding

Centralized assay datasets for modelling support of small drug discovery organizationsR44GM122196 · NIGMS · COLLABORATIONS PHARMACEUTICALS, INC. · PI EKINS, SEAN · 2018 to 2022
$3.3M
MegaTox for analyzing and visualizing data across different screening systemsR43ES031038 · NIEHS · COLLABORATIONS PHARMACEUTICALS, INC. · PI EKINS, SEAN · 2019 to 2020
$349k
Centralized assay datasets for modelling support of small drug discovery organizationsR43GM122196 · NIGMS · COLLABORATIONS PHARMACEUTICALS, INC. · PI EKINS, SEAN · 2017 to 2017
$150k
NIEHS NIH HHS R43 ES031038NIGMS NIH HHS R43 GM122196NIGMS NIH HHS R44 GM122196
6 · The paper itself

Abstract

Ultraviolet-visible (UV-Vis) absorption spectra are routinely collected as part of high-performance liquid chromatography (HPLC) analysis systems and can be used to identify chemical reaction products by comparison to the reference spectra. Here, we present UV-adVISor as a new computational tool for predicting the UV-Vis spectra from a molecule's structure alone. UV-Vis prediction was approached as a sequence-to-sequence problem. We utilized Long-Short Term Memory and attention-based neural networks with Extended Connectivity Fingerprint Diameter 6 or molecule SMILES to generate predictive models for the UV spectra. We have produced two spectrum datasets (dataset I,

Indexed as

LightNeural Networks, ComputerChromatography, High Pressure Liquid

Identifiers

PMID34812602
PMCPMC9137254

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.