Evidence map›Paper›PMID 34811516›Full record

ArticleNature chemical biology2022

Discovery and biosynthesis of cyclic plant peptides via autocatalytic cyclases.

Desnor N Chigumba, Lisa S Mydy, Floris de Waal, Wenjie Li, Khadija Shafiq, Jesse W Wotring, Osama G Mohamed, Tim Mladenovic, Ashootosh Tripathi, Jonathan Z Sexton and 3 more

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Article in Nature chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 84 citations in OpenAlex.

  1. Emerging classes of copper enzymes.Current opinion in chemical biology · 2026
    Review
  2. Characterizing EthnomedicinalPlants (Basel, Switzerland) · 2026
    Article
  3. Advances and opportunities for computational interrogation of plant proteins.The Plant journal : for cell and molecular biology · 2026
    Review
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  5. Article
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  16. Article
  17. The emergence and loss of cyclic peptides inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 3 countries.

Desnor N Chigumba *Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.
Lisa S Mydy *Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0002-6976-4426
Floris de Waal *Bioinformatics Group, Wageningen University, Wageningen, Netherlands.
Wenjie LiDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.
Khadija ShafiqDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.
Jesse W WotringDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.
Osama G MohamedNatural Products Discovery Core, Life Sciences Institute, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0003-3216-6948
Tim MladenovicDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.ORCID http://orcid.org/0000-0003-0710-039X
Ashootosh TripathiDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.
Jonathan Z SextonDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.
Satria KautsarBioinformatics Group, Wageningen University, Wageningen, Netherlands.ORCID http://orcid.org/0000-0002-9815-511X
Marnix H MedemaBioinformatics Group, Wageningen University, Wageningen, Netherlands. marnix.medema@wur.nl.ORCID http://orcid.org/0000-0002-2191-2821
Roland D KerstenDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA. rkersten@umich.edu.ORCID http://orcid.org/0000-0001-5811-7330
University of Michigan · USWageningen University & Research · NLCairo University · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many bioactive plant cyclic peptides form side-chain-derived macrocycles. Lyciumins, cyclic plant peptides with tryptophan macrocyclizations, are ribosomal peptides (RiPPs) originating from repetitive core peptide motifs in precursor peptides with plant-specific BURP (BNM2, USP, RD22 and PG1beta) domains, but the biosynthetic mechanism for their formation has remained unknown. Here, we characterize precursor-peptide BURP domains as copper-dependent autocatalytic peptide cyclases and use a combination of tandem mass spectrometry-based metabolomics and plant genomics to systematically discover five BURP-domain-derived plant RiPP classes, with mono- and bicyclic structures formed via tryptophans and tyrosines, from botanical collections. As BURP-domain cyclases are scaffold-generating enzymes in plant specialized metabolism that are physically connected to their substrates in the same polypeptide, we introduce a bioinformatic method to mine plant genomes for precursor-peptide-encoding genes by detection of repetitive substrate domains and known core peptide features. Our study sets the stage for chemical, biosynthetic and biological exploration of plant RiPP natural products from BURP-domain cyclases.

Indexed as

Amino Acid SequenceCatalysisCell Membrane PermeabilityCyclizationGenome, PlantPeptides, CyclicPlant ProteinsTandem Mass SpectrometryPeptides, CyclicPlant Proteins

Identifiers

PMID34811516
OpenAlexW3215934715

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.