Evidence map›Paper›PMID 34811429›Full record

ArticleScientific reports2021

Saliva is superior over nasopharyngeal swab for detecting SARS-CoV2 in COVID-19 patients.

Getachew Tesfaye Beyene, Fekadu Alemu, Eyerusalem Solomon Kebede, Dawit Hailu Alemayehu, Tamirayehu Seyoum, Dessalegn Abeje Tefera, Gebeyehu Assefa, Abebech Tesfaye, Anteneh Habte, Gadissa Bedada and 6 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

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  18. Severe Acute Respiratory Syndrome Coronavirus 2 Delta Vaccine Breakthrough Transmissibility in Alachua County, Florida.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Getachew Tesfaye BeyeneArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia. getachew.tesfaye@ahri.gov.et.ORCID 0000-0001-7273-7333
Fekadu AlemuArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia.
Eyerusalem Solomon KebedeArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia.
Dawit Hailu AlemayehuArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia.
Tamirayehu SeyoumArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia.
Dessalegn Abeje TeferaArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia.
Gebeyehu AssefaArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia.
Abebech TesfayeArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia.
Anteneh HabteArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia.
Gadissa BedadaSt. Paul's Hospital Millennium Medical College, Addis Ababa, Ethiopia.
Birhanemeskel TegeneSt. Paul's Hospital Millennium Medical College, Addis Ababa, Ethiopia.
Melese YeshambawArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia.ORCID 0000-0002-7672-9637
Liya WassieArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia.
Adane MihretArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia.
Alemseged AbdissaArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia.
Andargachew MuluArmauer Hansen Research Institute, Jumma Road ALERT Compound, P.O. Box address 1005, Addis Ababa, Ethiopia.
All Africa Leprosy Tuberculosis and Rehabilitation Training Centre · ETSt. Paul's Hospital Millennium Medical College · ET

Funding

Ethiopia-Emory TB Research Training ProgramD43TW009127 · FIC · EMORY UNIVERSITY · PI HENRY M BLUMBERG, Kidist Bobosha · 2013 to 2026
$3.4M
FIC NIH HHS D43 TW009127
6 · The paper itself

Abstract

Scaling up of diagnostic capacity is needed to mitigate the global pandemic of SARS-CoV2. However, there are challenges including shortage of sample collection swabs and transport medium. Saliva has been recommended as a simple, low-cost, non-invasive option. However, data from different populations and settings are limited. Here, we showed that saliva could be a good alternative sample to diagnose COVID-19 patients. Pair of NPS-saliva samples was collected from 152 symptomatic; confirmed COVID-19 patients, and compared their positivity rate, viral load, and duration of viral shedding. From 152 patients, 80 (52.63%) tested positive and 72 (47.37%) were negative for SARSA-CoV2 in NPS sample. In saliva, 129 (92.14%) were tested positive and 11 (7.86%) were negative on the day of admission to hospital. The overall percent agreement of RT-PCR result of Saliva to NPS was 70% (196/280). A comparison of viral load from 72 NPS-saliva pair samples on day of admission shows saliva contains significantly higher viral load (P < 0.001). In conclusion, saliva has higher yield in detecting SARS-CoV2, and COVID-19 patients show higher viral load and prolonged period of viral shedding in saliva. Therefore, we recommend saliva as a better alternative sample to NPS to diagnose COVID-19 patients.

Indexed as

COVID-19COVID-19 Nucleic Acid TestingHospitalizationHumansNasopharynxPandemicsRNA, ViralSalivaSARS-CoV-2Specimen HandlingViral LoadVirus SheddingRNA, Viral

Identifiers

PMID34811429
PMCPMC8608806
OpenAlexW3217747058

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.