Evidence map›Paper›PMID 34811366›Full record

ArticleNature communications2021

The main oxidative inactivation pathway of the plant hormone auxin.

Ken-Ichiro Hayashi, Kazushi Arai, Yuki Aoi, Yuka Tanaka, Hayao Hira, Ruipan Guo, Yun Hu, Chennan Ge, Yunde Zhao, Hiroyuki Kasahara and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
33.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed, 227 citations in OpenAlex.

  1. Review
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  8. Genetic Mapping of thePlants (Basel, Switzerland) · 2026
    Article
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  12. Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  17. Review
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45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Ken-Ichiro HayashiDepartment of Biochemistry, Okayama University of Science, Okayama, 700-0005, Japan. hayashi@dbc.ous.ac.jp.ORCID 0000-0002-9812-2801
Kazushi AraiDepartment of Biochemistry, Okayama University of Science, Okayama, 700-0005, Japan.ORCID 0000-0001-9460-9818
Yuki AoiDepartment of Biological Production Science, United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.ORCID 0000-0002-8274-3355
Yuka TanakaDepartment of Biochemistry, Okayama University of Science, Okayama, 700-0005, Japan.ORCID 0000-0001-7576-4230
Hayao HiraGraduate School of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.ORCID 0000-0003-3150-3658
Ruipan GuoSection of Cell and Developmental Biology, University of California San Diego, Gilman Dr. La Jolla, San Diego, CA, 92093-0116, USA.ORCID 0000-0002-5999-8069
Yun HuSection of Cell and Developmental Biology, University of California San Diego, Gilman Dr. La Jolla, San Diego, CA, 92093-0116, USA.ORCID 0000-0002-6932-958X
Chennan GeSection of Cell and Developmental Biology, University of California San Diego, Gilman Dr. La Jolla, San Diego, CA, 92093-0116, USA.ORCID 0000-0002-5435-9639
Yunde ZhaoSection of Cell and Developmental Biology, University of California San Diego, Gilman Dr. La Jolla, San Diego, CA, 92093-0116, USA.ORCID 0000-0002-7224-8449
Hiroyuki KasaharaGraduate School of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, 183-8509, Japan.ORCID 0000-0002-4858-0978
Kosuke FukuiDepartment of Biochemistry, Okayama University of Science, Okayama, 700-0005, Japan.ORCID 0000-0002-1955-624X
Okayama University of Science · JPUniversity of California San Diego · USTokyo University of Agriculture and Technology · JPRIKEN Center for Sustainable Resource Science · JP

Funding

Molecular mechanisms of auxin-mediated plant developmentR01GM114660 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZHAO, YUNDE · 2015 to 2018
$1.2M
NIGMS NIH HHS R01 GM114660
6 · The paper itself

Abstract

Inactivation of the phytohormone auxin plays important roles in plant development, and several enzymes have been implicated in auxin inactivation. In this study, we show that the predominant natural auxin, indole-3-acetic acid (IAA), is mainly inactivated via the GH3-ILR1-DAO pathway. IAA is first converted to IAA-amino acid conjugates by GH3 IAA-amidosynthetases. The IAA-amino acid conjugates IAA-aspartate (IAA-Asp) and IAA-glutamate (IAA-Glu) are storage forms of IAA and can be converted back to IAA by ILR1/ILL amidohydrolases. We further show that DAO1 dioxygenase irreversibly oxidizes IAA-Asp and IAA-Glu into 2-oxindole-3-acetic acid-aspartate (oxIAA-Asp) and oxIAA-Glu, which are subsequently hydrolyzed by ILR1 to release inactive oxIAA. This work established a complete pathway for the oxidative inactivation of auxin and defines the roles played by auxin homeostasis in plant development.

Indexed as

AmidohydrolasesAmino AcidsArabidopsisArabidopsis ProteinsAspartic AcidDioxygenasesGene Expression Regulation, PlantGlutamic AcidHomeostasisHydrolysisIndoleacetic AcidsOxidation-ReductionOxidative StressOxindolesPlant DevelopmentPlant Growth Regulators2-oxindole-3-acetic acidAmidohydrolasesAmino AcidsArabidopsis ProteinsAspartic AcidDioxygenasesGlutamic AcidILR1 protein, Arabidopsisindoleacetic acidIndoleacetic AcidsOxindolesPlant Growth Regulators

Identifiers

PMID34811366
PMCPMC8608799
OpenAlexW3216752034

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.