Evidence map›Paper›PMID 34807912›Full record

ArticlePLoS genetics2021

NF-κB modifies the mammalian circadian clock through interaction with the core clock protein BMAL1.

Yang Shen, Mehari Endale, Wei Wang, Andrew R Morris, Lauren J Francey, Rachel L Harold, David W Hammers, Zhiguang Huo, Carrie L Partch, John B Hogenesch and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 82 citations in OpenAlex.

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  11. Lack of GPNMB Is Associated With Altered Lipid and Glucose Metabolism and Disrupted Diurnal Hepatic Glycogen Regulation.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
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  14. The pivotal role and intervention strategies of BMAL1 mediated circadian clock dysregulation in intervertebral disc degeneration.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
    Review
  15. Article
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  18. Autonomous Oscillations of NF-κB.Advances in experimental medicine and biology · 2026
    Review
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Yang ShenDepartment of Physiology and Functional Genomics, University of Florida College of Medicine, Gainesville, Florida, United States of America.
Mehari EndaleDepartment of Physiology and Functional Genomics, University of Florida College of Medicine, Gainesville, Florida, United States of America.ORCID 0000-0002-1224-9415
Wei WangDepartment of Radiation Oncology and Center for Cancer Research, University of Tennessee Health Science Center, Memphis, Tennessee, United States of America.
Andrew R MorrisDepartment of Physiology and Functional Genomics, University of Florida College of Medicine, Gainesville, Florida, United States of America.ORCID 0000-0002-4121-1467
Lauren J FranceyDivision of Human Genetics and Immunobiology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.
Rachel L HaroldDepartment of Chemistry and Biochemistry, University of California Santa Cruz, Santa Cruz, California, United States of America.ORCID 0000-0002-1684-4780
David W HammersDepartment of Pharmacology and Therapeutics, University of Florida College of Medicine, Gainesville, Florida, United States of America.ORCID 0000-0003-2129-4047
Zhiguang HuoDepartment of Biostatistics, College of Public Health & Health Professions, University of Florida College of Medicine, Gainesville, Florida, United States of America.
Carrie L PartchDepartment of Chemistry and Biochemistry, University of California Santa Cruz, Santa Cruz, California, United States of America.
John B HogeneschDivision of Human Genetics and Immunobiology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.
Zhao-Hui WuDepartment of Radiation Oncology and Center for Cancer Research, University of Tennessee Health Science Center, Memphis, Tennessee, United States of America.
Andrew C LiuDepartment of Physiology and Functional Genomics, University of Florida College of Medicine, Gainesville, Florida, United States of America.ORCID 0000-0003-1927-0900
University of Florida · USCincinnati Children's Hospital Medical Center · USUniversity of California, Santa Cruz · USUniversity of Tennessee Health Science Center · US

Funding

Molecular, Cellular and Physiological Mechanisms of the Mammalian Circadian ClockR01NS054794 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI HOGENESCH, JOHN B, LIU, ANDREW C. · 2007 to 2022
$8.1M
Structures and mechanisms of circadian rhythms from cyanobacteria to humansR35GM141849 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PARTCH, CARRIE L · 2021 to 2025
$4.6M
Exploring the structural basis for 24-hour timekeeping in mammalsR01GM107069 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PARTCH, CARRIE L · 2013 to 2020
$3.2M
Genotoxic NF-kB Signaling in CancerR01CA149251 · NCI · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI WU, ZHAOHUI · 2011 to 2015
$1.5M
NCI NIH HHS R01 CA149251NIGMS NIH HHS R01 GM107069NIGMS NIH HHS R35 GM141849NINDS NIH HHS R01 NS054794
6 · The paper itself

Abstract

In mammals, the circadian clock coordinates cell physiological processes including inflammation. Recent studies suggested a crosstalk between these two pathways. However, the mechanism of how inflammation affects the clock is not well understood. Here, we investigated the role of the proinflammatory transcription factor NF-κB in regulating clock function. Using a combination of genetic and pharmacological approaches, we show that perturbation of the canonical NF-κB subunit RELA in the human U2OS cellular model altered core clock gene expression. While RELA activation shortened period length and dampened amplitude, its inhibition lengthened period length and caused amplitude phenotypes. NF-κB perturbation also altered circadian rhythms in the master suprachiasmatic nucleus (SCN) clock and locomotor activity behavior under different light/dark conditions. We show that RELA, like the clock repressor CRY1, repressed the transcriptional activity of BMAL1/CLOCK at the circadian E-box cis-element. Biochemical and biophysical analysis showed that RELA binds to the transactivation domain of BMAL1. These data support a model in which NF-kB competes with CRY1 and coactivator CBP/p300 for BMAL1 binding to affect circadian transcription. This is further supported by chromatin immunoprecipitation analysis showing that binding of RELA, BMAL1 and CLOCK converges on the E-boxes of clock genes. Taken together, these data support a significant role for NF-κB in directly regulating the circadian clock and highlight mutual regulation between the circadian and inflammatory pathways.

Indexed as

AnimalsARNTL Transcription FactorsCalcium-Binding ProteinsCell Line, TumorCircadian ClocksCircadian RhythmCLOCK ProteinsCryptochromesGene Expression Regulation, DevelopmentalHumansInflammationNF-kappa BSuprachiasmatic NucleusTranscription Factor RelAARNTL Transcription Factorscalcium-binding protein-1 (liver)Calcium-Binding ProteinsCLOCK protein, humanCLOCK ProteinsCRY1 protein, humanCryptochromesNF-kappa BRELA protein, humanTranscription Factor RelA

Identifiers

PMID34807912
PMCPMC8648109
OpenAlexW3217180261

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.