Evidence map›Paper›PMID 34806826›Full record

ArticleThe plant genome2022

Genetic mapping reveals complex architecture and candidate genes involved in common bean response to Meloidogyne incognita infection.

Willian Giordani, Henrique Castro Gama, Alisson Fernando Chiorato, João Paulo Rodrigues Marques, Heqiang Huo, Luciana Lasry Benchimol-Reis, Luis Eduardo Aranha Camargo, Antonio Augusto Franco Garcia, Maria Lucia Carneiro Vieira

Abstract read
In one paragraph

Article in The plant genome, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Novel quantitative trait loci conferring resistance to root-knot nematodes in lima bean (Molecular breeding : new strategies in plant improvement · 2026
    Article
  2. Article
  3. Article
  4. Combating Root-Knot Nematodes (Plants (Basel, Switzerland) · 2025
    Review
  5. Frontiers in plant science · 2025
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Willian Giordani"Luiz de Queiroz" College of Agriculture, Univ. of São Paulo, Piracicaba, São Paulo, 13418-900, Brazil.ORCID 0000-0002-1685-1446
Henrique Castro Gama"Luiz de Queiroz" College of Agriculture, Univ. of São Paulo, Piracicaba, São Paulo, 13418-900, Brazil.ORCID 0000-0002-9149-5955
Alisson Fernando ChioratoGrains and Fibers Center, Agronomic Institute of Campinas, Campinas, São Paulo, 13075-630, Brazil.ORCID 0000-0002-7004-4717
João Paulo Rodrigues Marques"Luiz de Queiroz" College of Agriculture, Univ. of São Paulo, Piracicaba, São Paulo, 13418-900, Brazil.ORCID 0000-0001-5052-234X
Heqiang HuoMid-Florida Research and Education Center, Univ. of Florida, Apopka, FL, 32703, USA.
Luciana Lasry Benchimol-ReisGrains and Fibers Center, Agronomic Institute of Campinas, Campinas, São Paulo, 13075-630, Brazil.ORCID 0000-0003-1008-5936
Luis Eduardo Aranha Camargo"Luiz de Queiroz" College of Agriculture, Univ. of São Paulo, Piracicaba, São Paulo, 13418-900, Brazil.ORCID 0000-0002-5650-5695
Antonio Augusto Franco Garcia"Luiz de Queiroz" College of Agriculture, Univ. of São Paulo, Piracicaba, São Paulo, 13418-900, Brazil.ORCID 0000-0003-0634-3277
Maria Lucia Carneiro Vieira"Luiz de Queiroz" College of Agriculture, Univ. of São Paulo, Piracicaba, São Paulo, 13418-900, Brazil.ORCID 0000-0003-0341-5714

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Root-knot nematodes (RKNs), particularly Meloidogyne incognita, are among the most damaging and prevalent agricultural pathogens due to their ability to infect roots of almost all crops. The best strategy for their control is through the use of resistant cultivars. However, laborious phenotyping procedures make it difficult to assess nematode resistance in breeding programs. For common bean, this task is especially challenging because little has been done to discover resistance genes or markers to assist selection. We performed genome-wide association studies and quantitative trait loci mapping to explore the genetic architecture and genomic regions underlying the resistance to M. incognita and to identify candidate resistance genes. Phenotypic data were collected by a high-throughput assay, and the number of egg masses and the root-galling index were evaluated. Complex genetic architecture and independent genomic regions were associated with each trait. Single nucleotide polymorphisms on chromosomes Pv06, Pv07, Pv08, and Pv11 were associated with the number of egg masses, and SNPs on Pv01, Pv02, Pv05, and Pv10 were associated with root-galling. A total of 216 candidate genes were identified, including 14 resistance gene analogs and five differentially expressed in a previous RNA sequencing analysis. Histochemical analysis indicated that reactive oxygen species might play a role in the resistance response. Our findings open new perspectives to improve selection efficiency for RKN resistance, and the candidate genes are valuable targets for functional investigation and gene editing approaches.

Indexed as

PhaseolusTylenchoideaAnimalsGenome-Wide Association StudyPlant BreedingPlant Diseases

Identifiers

PMID34806826
PMCPMC12807100

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.