Evidence map›Paper›PMID 34806648›Full record

ArticleJCI insight2021

Autoreactive T cell receptors with shared germline-like α chains in type 1 diabetes.

Peter S Linsley, Fariba Barahmand-Pour-Whitman, Elisa Balmas, Hannah A DeBerg, Kaitlin J Flynn, Alex K Hu, Mario G Rosasco, Janice Chen, Colin O'Rourke, Elisavet Serti and 9 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in JCI insight, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
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  3. Review
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  5. Article
  6. Review
  7. Review
  8. Article
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  10. Article
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  12. Article
  13. Integrating Omics into Functional Biomarkers of Type 1 Diabetes.Cold Spring Harbor perspectives in medicine · 2024
    Review
  14. Article
  15. Article
  16. Review
  17. A minority of proliferating human CD4Frontiers in immunology · 2024
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 2 countries.

Peter S LinsleyCenter for Systems Immunology.
Fariba Barahmand-Pour-WhitmanCenter for Systems Immunology.
Elisa BalmasCenter for Translational Research, and.
Hannah A DeBergCenter for Systems Immunology.
Kaitlin J FlynnCenter for Systems Immunology.
Alex K HuCenter for Systems Immunology.
Mario G RosascoCenter for Systems Immunology.
Janice ChenCenter for Translational Research, and.
Colin O'RourkeCenter for Interventional Immunology, Benaroya Research Institute at Virginia Mason, Seattle, Washington, USA.
Elisavet SertiImmune Tolerance Network, Bethesda, Maryland, USA.
Vivian H GersukCenter for Systems Immunology.
Keshav MotwaniDepartment of Pathology, Immunology, and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, Florida, USA.
Howard R SeayDepartment of Pathology, Immunology, and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, Florida, USA.
Todd M BruskoDepartment of Pathology, Immunology, and Laboratory Medicine, College of Medicine, University of Florida, Gainesville, Florida, USA.
William W KwokCenter for Translational Research, and.
Cate SpeakeCenter for Interventional Immunology, Benaroya Research Institute at Virginia Mason, Seattle, Washington, USA.
Carla J GreenbaumCenter for Interventional Immunology, Benaroya Research Institute at Virginia Mason, Seattle, Washington, USA.
Gerald T NepomImmune Tolerance Network, Bethesda, Maryland, USA.
Karen CerosalettiCenter for Translational Research, and.
Institute of Immunology · HRUniversity of Florida Health · USVirginia Mason Medical Center · USImmune Tolerance Network · US

Funding

Immune Tolerance Network UM1 2023 SupplementUM1AI109565 · NIAID · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI Mark S Anderson, Jane Hoyt Buckner · 2014 to 2026
$451.6M
NIDDK Type 1 Diabetes TrialNet Data Coordinating CenterUC4DK106993 · NIDDK · UNIVERSITY OF SOUTH FLORIDA · PI KRISCHER, JEFFREY P · 2015 to 2015
$36.6M
Project 3P01AI042288 · NIAID · UNIVERSITY OF FLORIDA · PI Todd Michael Brusko · 1997 to 2026
$32.9M
Type 1 Diabetes TrialNet Clinical Network HubU01DK103282 · NIDDK · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI CARLA J GREENBAUM, KURT J GRIFFIN · 2014 to 2026
$14.2M
Single Cell Transcriptome Analysis of Islet Antigen Reactive Memory CD4+ T Cells in Establshed T1DDP3DK110867 · NIDDK · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI LINSLEY, PETER S · 2016 to 2016
$510k
NIAID NIH HHS P01 AI042288NIAID NIH HHS UM1 AI109565NIDDK NIH HHS DP3 DK110867NIDDK NIH HHS U01 DK103282NIDDK NIH HHS UC4 DK106993
6 · The paper itself

Abstract

Human islet antigen reactive CD4+ memory T cells (IAR T cells) play a key role in the pathogenesis of autoimmune type 1 diabetes (T1D). Using single-cell RNA sequencing (scRNA-Seq) to identify T cell receptors (TCRs) in IAR T cells, we have identified a class of TCRs that share TCRα chains between individuals ("public" chains). We isolated IAR T cells from blood of healthy, new-onset T1D and established T1D donors using multiplexed CD154 enrichment and identified paired TCRαβ sequences from 2767 individual cells. More than a quarter of cells shared TCR junctions between 2 or more cells ("expanded"), and 29/47 (~62%) of expanded TCRs tested showed specificity for islet antigen epitopes. Public TCRs sharing TCRα junctions were most prominent in new-onset T1D. Public TCR sequences were more germline like than expanded unique, or "private," TCRs, and had shorter junction sequences, suggestive of fewer random nucleotide insertions. Public TCRα junctions were often paired with mismatched TCRβ junctions in TCRs; remarkably, a subset of these TCRs exhibited cross-reactivity toward distinct islet antigen peptides. Our findings demonstrate a prevalent population of IAR T cells with diverse specificities determined by TCRs with restricted TCRα junctions and germline-constrained antigen recognition properties. Since these "innate-like" TCRs differ from previously described immunodominant TCRβ chains in autoimmunity, they have implications for fundamental studies of disease mechanisms. Self-reactive restricted TCRα chains and their associated epitopes should be considered in fundamental and translational investigations of TCRs in T1D.

Indexed as

AdolescentAdultDiabetes Mellitus, Type 1FemaleGerm CellsHumansImmunoglobulin alpha-ChainsMaleReceptors, Antigen, T-CellYoung AdultImmunoglobulin alpha-ChainsReceptors, Antigen, T-CellAutoimmunityT cell receptor

Identifiers

PMID34806648
PMCPMC8663791
OpenAlexW3215842602

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.