Evidence map›Paper›PMID 34803267›Full record

ArticleBioinformation2020

Identification of key regulators in parathyroid adenoma using an integrative gene network analysis.

Nikhat Imam, Aftab Alam, Mohd Faizan Siddiqui, Mohd Murshad Ahmed, Md Zubbair Malik, Md Jawed Ikbal Khan, Romana Ishrat

Abstract read
In one paragraph

Article in Bioinformation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. The biology of SCUBE.Journal of biomedical science · 2023
    Review
  2. Common Key Genes in Differentiating Parathyroid Adenoma From Thyroid Adenoma.Hormone and metabolic research = Hormon- und Stoffwechselforschung = Hormones et metabolisme · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nikhat ImamInstitute of Computer Science and Information Technology, Department of Mathematics, Magadh University, Bodh Gaya-824234, Bihar, India.
Aftab AlamCentre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi-110025, India.
Mohd Faizan SiddiquiInternational Medical Faculty, Osh State University, Osh City, 723500, Kyrgyz Republic, Kyrgyzstan.
Mohd Murshad AhmedCentre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi-110025, India.
Md Zubbair MalikSchool of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, India.
Md Jawed Ikbal KhanInstitute of Computer Science and Information Technology, Department of Mathematics, Magadh University, Bodh Gaya-824234, Bihar, India.
Romana IshratCentre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi-110025, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Parathyroid adenoma (PA) is marked by a certain benign outgrowth in the surface of parathyroid glands. The transcriptome analysis of parathyroid adenomas can provide a deep insight into actively expressed genes and transcripts. Hence, we analyzed and compared the gene expression profiles of parathyroid adenomas and healthy parathyroid gland tissues from Gene Expression Omnibus (GEO) database. We identified a total of 280 differentially expressed genes (196 up-regulated, 84 down-regulated), which are involved in a wide array of biological processes. We further constructed a gene interaction network and analyzed its topological properties to know the network structure and its hidden mechanism. This will help to understand the molecular mechanisms underlying parathyroid adenoma development. We thus identified 13 key regulators (PRPF19, SMC3, POSTN, SNIP1, EBF1, MEIS2, PAX9, SCUBE2, WNT4, ARHGAP10, DOCK5, CAV1 and VSIR), which are deep-rooted from top to bottom in the gene interaction network forming a backbone for the network. The structural features of the network are probably maintained by crosstalk between important genes within the network along with associated functional modules.Thus, gene-expression profiling and network approach could be used to provide an independent platform to glen insights from available clinical data.

Indexed as

DEGsgene ontologyMicroarray gene expressionnetwork analysisparathyroid adenomaprimary hyperparathyroidism

Identifiers

PMID34803267
PMCPMC8573468

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