Evidence map›Paper›PMID 34800968›Full record

ArticleBMC plant biology2021

A rapid, simple, and highly efficient method for VIGS and in vitro-inoculation of plant virus by INABS applied to crops that develop axillary buds and can survive from cuttings.

Qili Liu, Kedong Xu, Lun Yi, Yalin Hou, Dongxiao Li, Haiyan Hu, Feng Zhou, Puwen Song, Yongang Yu, Qichao Wei and 7 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Qili Liu *College of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
Kedong Xu *Key Laboratory of Plant Genetics and Molecular Breeding, Zhoukou Normal University, Zhoukou, 466000, China.
Lun YiPostdoctoral Research Base, Henan Institute of Science and Technology, Xinxiang, 453001, China.
Yalin HouPostdoctoral Research Base, Henan Institute of Science and Technology, Xinxiang, 453001, China.
Dongxiao LiHenan Engineering Research Center of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, 453001, China.
Haiyan HuHenan Engineering Research Center of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, 453001, China.
Feng ZhouHenan Engineering Research Center of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, 453001, China.
Puwen SongHenan Engineering Research Center of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, 453001, China.
Yongang YuHenan Engineering Research Center of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, 453001, China.
Qichao WeiHenan Engineering Research Center of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, 453001, China.
Yuanyuan GuanHenan Engineering Research Center of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, 453001, China.
Ping HuHenan Engineering Research Center of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, 453001, China.
Ruifang BuHenan Engineering Research Center of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, 453001, China.
Eryong ChenHenan Engineering Research Center of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, 453001, China.
Xiaojia SuHenan Engineering Research Center of Crop Genome Editing, Henan Institute of Science and Technology, Xinxiang, 453001, China.
Honglian LiCollege of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China. honglianli@sina.com.
Chengwei LiPostdoctoral Research Base, Henan Institute of Science and Technology, Xinxiang, 453001, China. lcw@haut.edu.cn.
Henan Institute of Science and Technology · CNHenan Agricultural University · CNHenan University of Technology · CNZhoukou Normal University · CN

Funding

National Natural Science Foundation of China 31801707
6 · The paper itself

Abstract

backgroundVirus-induced gene silencing (VIGS) is one of the most convenient and powerful methods of reverse genetics. In vitro-inoculation of plant virus is an important method for studying the interactions between viruses and plants. Agrobacterium-based infiltration has been widely adopted as a tool for VIGS and in vitro-inoculation of plant virus. Most agrobacterium-based infiltration methods applied to VIGS and virus inoculation have the characteristics of low transformation efficiencies, long plant growth time, large amounts of plant tissue, large test spaces, and complex preparation procedures. Therefore, a rapid, simple, economical, and highly efficient VIGS and virus inoculation method is in need. Previous studies have shown that the selection of suitable plant tissues and inoculation sites is the key to successful infection.

resultsIn this study, Tobacco rattle virus (TRV) mediated VIGS and Tomato yellow leaf curl virus (TYLCV) for virus inoculation were developed in tomato plants based on the agrobacterium tumefaciens-based infiltration by injection of the no-apical-bud stem section (INABS). The no-apical-bud stem section had a "Y- type" asymmetric structure and contained an axillary bud that was about 1-3 cm in length. This protocol provides high transformation (56.7%) and inoculation efficiency (68.3%), which generates VIGS transformants or diseased plants in a very short period (8 dpi). Moreover, it greatly reduces the required experimental space. This method will facilitate functional genomic studies and large-scale disease resistance screening.

conclusionsOverall, a rapid, simple, and highly efficient method for VIGS and virus inoculation by INABS was developed in tomato. It was reasonable to believe that it can be used as a reference for the other virus inoculation methods and for the application of VIGS to other crops (such as sweet potato, potato, cassava and tobacco) that develop axillary buds and can survive from cuttings.

Indexed as

Gene SilencingAgrobacteriumBegomovirusCrops, AgriculturalGene Expression Regulation, PlantPlant BreedingPlant DiseasesPlant VirusesSolanum lycopersicumAgrobacterium-based infiltrationInjection of no-apical-bud stem sections (INABS)In vitro-inoculation of plant virusVirus-induced gene silencing (VIGS)

Identifiers

PMID34800968
PMCPMC8605592
OpenAlexW3217402509

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.