Evidence map›Paper›PMID 34799704›Full record

ReviewNature reviews. Microbiology2022

Ecology, evolution and spillover of coronaviruses from bats.

Manuel Ruiz-Aravena, Clifton McKee, Amandine Gamble, Tamika Lunn, Aaron Morris, Celine E Snedden, Claude Kwe Yinda, Julia R Port, David W Buchholz, Yao Yu Yeo and 19 more

Erratum issuedOpen access · bronzeAbstract readReview
In one paragraph

Review in Nature reviews. Microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 163 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
163citing papers in PubMed, 3 pooled it
13.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

163 citing papers in PubMed, 3 syntheses or guidelines pooled it, 284 citations in OpenAlex.

  1. Impacts of bat use of anthropogenic structures on bats and humans.Conservation biology : the journal of the Society for Conservation Biology · 2026
    Pooled it
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  5. Review
  6. Novel AfricanJournal of virology · 2026
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  15. Extra gene coding capacity of SARS-CoV-2 provides a virus engineering platform for in vitro and in vivo applications.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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103 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

29 authors at 10 institutions in 3 countries.

Manuel Ruiz-Aravena *Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA.ORCID http://orcid.org/0000-0001-8463-7858
Clifton McKee *Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.
Amandine GambleDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, USA.
Tamika LunnCentre for Planetary Health and Food Security, Griffith University, Nathan, QLD, Australia.
Aaron MorrisDepartment of Veterinary Medicine, University of Cambridge, Cambridge, UK.
Celine E SneddenDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, USA.
Claude Kwe YindaNational Institute of Allergy and Infectious Diseases, Hamilton, MT, USA.
Julia R PortNational Institute of Allergy and Infectious Diseases, Hamilton, MT, USA.
David W BuchholzDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Yao Yu YeoDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0002-7604-2296
Christina FaustDepartment of Biology, Center for Infectious Disease Dynamics, Pennsylvania State University, University Park, PA, USA.
Elinor JaxDepartment of Veterinary Medicine, University of Cambridge, Cambridge, UK.
Lauren DeeDepartment of Veterinary Medicine, University of Cambridge, Cambridge, UK.
Devin N JonesDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA.
Maureen K KesslerDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA.ORCID http://orcid.org/0000-0001-5380-5281
Caylee FalvoDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA.
Daniel CrowleyDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA.
Nita BhartiDepartment of Biology, Center for Infectious Disease Dynamics, Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0003-1940-7794
Cara E BrookDepartment of Ecology and Evolution, University of Chicago, Chicago, IL, USA.
Hector C AguilarDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.
Alison J PeelCentre for Planetary Health and Food Security, Griffith University, Nathan, QLD, Australia.ORCID http://orcid.org/0000-0003-3538-3550
Olivier RestifDepartment of Veterinary Medicine, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0001-9158-853X
Tony SchountzDepartment of Microbiology, Immunology, and Pathology, College of Veterinary Medicine and Biomedical Sciences, Colorado State University, Fort Collins, CO, USA.ORCID http://orcid.org/0000-0002-1292-7650
Colin R ParrishDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0002-1836-6655
Emily S GurleyDepartment of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.
James O Lloyd-SmithDepartment of Ecology and Evolutionary Biology, University of California, Los Angeles, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0001-7941-502X
Peter J HudsonDepartment of Biology, Center for Infectious Disease Dynamics, Pennsylvania State University, University Park, PA, USA.
Vincent J MunsterNational Institute of Allergy and Infectious Diseases, Hamilton, MT, USA.ORCID http://orcid.org/0000-0002-2288-3196
Raina K PlowrightDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA. raina.plowright@montana.edu.ORCID http://orcid.org/0000-0002-3338-6590
Montana State University · USCornell University · USUniversity of Cambridge · GBNational Institute of Allergy and Infectious Diseases · USPennsylvania State University · USUniversity of California, Los Angeles · USGriffith University · AUJohns Hopkins University · USColorado State University · USUniversity of Chicago · US

Funding

Virus Ecology Unit - COVID-19 responseZIAAI001289 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MUNSTER, VINCENT · 2020 to 2025
$4.7M
Systems in Integrative BiologyT32GM008185 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHOU, TOM · 1987 to 2022
$4.6M
Mechanisms of Nipah virus fusion and entryR01AI109022 · NIAID · WASHINGTON STATE UNIVERSITY · PI AGUILAR-CARRENO, HECTOR · 2014 to 2024
$4.3M
Investigating seasonal drivers of viral zoonoses from Madagascar fruit batsR01AI129822 · NIAID · PASTEUR INSTITUTE FROM MADAGASCAR · PI DUSSART, PHILIPPE · 2017 to 2021
$674k
Identifying potent and broadly-neutralizing henipaviral antigens and epitopesR21AI142377 · NIAID · CORNELL UNIVERSITY · PI AGUILAR-CARRENO, HECTOR · 2019 to 2020
$416k
NIAID NIH HHS R01 AI109022NIAID NIH HHS R01 AI129822NIAID NIH HHS R21 AI142377NIGMS NIH HHS T32 GM008185
6 · The paper itself

Abstract

In the past two decades, three coronaviruses with ancestral origins in bats have emerged and caused widespread outbreaks in humans, including severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Since the first SARS epidemic in 2002-2003, the appreciation of bats as key hosts of zoonotic coronaviruses has advanced rapidly. More than 4,000 coronavirus sequences from 14 bat families have been identified, yet the true diversity of bat coronaviruses is probably much greater. Given that bats are the likely evolutionary source for several human coronaviruses, including strains that cause mild upper respiratory tract disease, their role in historic and future pandemics requires ongoing investigation. We review and integrate information on bat-coronavirus interactions at the molecular, tissue, host and population levels. We identify critical gaps in knowledge of bat coronaviruses, which relate to spillover and pandemic risk, including the pathways to zoonotic spillover, the infection dynamics within bat reservoir hosts, the role of prior adaptation in intermediate hosts for zoonotic transmission and the viral genotypes or traits that predict zoonotic capacity and pandemic potential. Filling these knowledge gaps may help prevent the next pandemic.

Indexed as

ChiropteraCOVID-19AnimalsEvolution, MolecularHumansPhylogenySARS-CoV-2

Identifiers

PMID34799704
PMCPMC8603903
OpenAlexW3214432874

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.