Evidence map›Paper›PMID 34798232›Full record

ArticleNeuroImage2021

A method for mapping retinal images in early visual cortical areas.

Matthew Defenderfer, Pinar Demirayak, Kristina M Visscher

Open access · goldAbstract read
In one paragraph

Article in NeuroImage, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Increased Attentive Use Is Linked to More Idiosyncratic Functional Connections.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Matthew DefenderferCivitan International Research Center, University of Alabama at Birmingham, Birmingham, AL; Department of Neurobiology, University of Alabama at Birmingham, Birmingham, AL.
Pinar DemirayakCivitan International Research Center, University of Alabama at Birmingham, Birmingham, AL; Department of Neurobiology, University of Alabama at Birmingham, Birmingham, AL. Electronic address: pinarde@uab.edu.
Kristina M VisscherCivitan International Research Center, University of Alabama at Birmingham, Birmingham, AL; Department of Neurobiology, University of Alabama at Birmingham, Birmingham, AL.
University of Alabama at Birmingham · USCivitan International · US

Funding

Visual Phenotyping CoreP30EY003039 · NEI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Paul Douglas Gamlin · 1985 to 2026
$16.9M
UAB Center for Clinical and Translational Science (CCTS) UL1UL1TR000165 · NCATS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2012 to 2013
$9.6M
Pilot CoreP30AG022838 · NIA · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BALL, KARLENE K · 2003 to 2020
$5.7M
Characterization of Multiple Factors in Training and Plasticity in Central Vision LossR01EY031589 · NEI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SEITZ, AARON R, TURK-BROWNE, NICHOLAS BENJAMIN · 2021 to 2024
$2.3M
Changes in Visual Cortical Connectivity Following Central Visual Field LossU01EY025858 · NEI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI VISSCHER, KRISTINA · 2016 to 2019
$2.1M
NCATS NIH HHS UL1 TR000165NEI NIH HHS P30 EY003039NEI NIH HHS R01 EY031589NEI NIH HHS U01 EY025858NIA NIH HHS P30 AG022838
6 · The paper itself

Abstract

The visual cortex has been a heavily studied region in neuroscience due to many factors, not the least of which is its well-defined retinotopic organization. This organization makes it possible to predict the general location of cortical regions that stimuli will activate during visual tasks. However, the precise and accurate mapping of these regions in human patients takes time, effort, and participant compliance that can be difficult in many patient populations. In humans, this retino-cortical mapping has typically been done using functional localizers which maximally activate the area of interest, and then the activation profile is thresholded and converted to a binary mask region of interest (ROI). An alternative method involves performing population receptive field (pRF) mapping of the whole visual field and choosing vertices whose pRF centers fall within the stimulus. This method ignores the spatial extent of the pRF which changes dramatically between central and peripheral vision. Both methods require a dedicated functional scan and depend on participants' stable fixation. The aim of this project was to develop a user-friendly method that can transform a retinal object of interest (for example, an image, a retinal lesion, or a preferred locus for fixation) from retinal space to its expected representation on the cortical surface without a functional scan. We modeled the retinal representation of each cortical vertex as a 2D Gaussian with a location and spatial extent given by a previously published retinotopic atlas. To identify how affected any cortical vertex would be by a given retinal object, we took the product of the retinal object with the Gaussian pRF of that cortical vertex. Normalizing this value gives the expected response of a given vertex to the retinal object. This method was validated using BOLD data obtained using a localizer with discrete visual stimuli, and showed good agreement to predicted values. Cortical localization of a visual stimulus or retinal defect can be obtained using our publicly available software, without a functional scan. Our software may benefit research with disease populations who have trouble maintaining stable fixation.

Indexed as

AdolescentAdultBrain MappingFemaleHumansImage Processing, Computer-AssistedMagnetic Resonance ImagingMaleRetinaSoftwareVisual CortexfMRIPopulation receptive fieldRetino-cortical mappingretinotopic mapVisual cortex

Identifiers

PMID34798232
PMCPMC9807285
OpenAlexW3214581705

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.