Evidence map›Paper›PMID 34798212›Full record

ArticleJournal of neuroscience methods2022

Seed-based dual regression: An illustration of the impact of dual regression's inherent filtering of global signal.

Robert E Kelly, Matthew J Hoptman, Soojin Lee, George S Alexopoulos, Faith M Gunning, Martin J McKeown

Abstract read
In one paragraph

Article in Journal of neuroscience methods, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Robert E KellyDepartment of Psychiatry, Weill Cornell Medical College, 21 Bloomingdale Road, White Plains, NY 10605, USA. Electronic address: rek2005@med.cornell.edu.
Matthew J HoptmanClinical Research Division, Nathan S. Kline Institute for Psychiatric Research,140 Old Orangeburg Road, Orangeburg, NY 10962, USA; Department of Psychiatry, New York University Grossman School of Medicine, 550 First Avenue, New York, NY 10016, USA. Electronic address: matthew.hoptman@nki.rfmh.org.
Soojin LeeWellcome Centre for Integrative Neuroimaging, FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, UK. Electronic address: soojin.lee@ndcn.ox.ac.uk.
George S AlexopoulosDepartment of Psychiatry, Weill Cornell Medical College, 21 Bloomingdale Road, White Plains, NY 10605, USA. Electronic address: gsalexop@med.cornell.edu.
Faith M GunningDepartment of Psychiatry, Weill Cornell Medical College, 21 Bloomingdale Road, White Plains, NY 10605, USA. Electronic address: fgd2002@med.cornell.edu.
Martin J McKeownNeurology, Pacific Parkinson's Research Center, University of British Columbia, 2221 Wesbrook Mall, Vancouver, British Columbia V6T 2B5 Canada. Electronic address: martin.mckeown@ubc.ca.

Funding

Relief: A Behavioral Intervention for Depression and Chronic Pain for Primary Care PracticesP50MH113838 · NIMH · WEILL MEDICAL COLL OF CORNELL UNIV · PI ALEXOPOULOS, GEORGE S · 2017 to 2020
$5.7M
RESEARCH TRAINING IN GERIATRIC MOOD DISORDERST32MH019132 · NIMH · WEILL MEDICAL COLL OF CORNELL UNIV · PI GUNNING, FAITH M · 1990 to 2025
$3.4M
White matter and emotional and cognitive control in late-onset depressionR01MH097735 · NIMH · WEILL MEDICAL COLL OF CORNELL UNIV · PI GUNNING, FAITH M · 2012 to 2016
$1.9M
Frontal White Matter and Impulsivity in SchizophreniaR01MH064783 · NIMH · NATHAN S. KLINE INSTITUTE FOR PSYCH RES · PI HOPTMAN, MATTHEW J · 2004 to 2007
$952k
Functional connectivity and DTI in schizophreniaR21MH084031 · NIMH · NATHAN S. KLINE INSTITUTE FOR PSYCH RES · PI HOPTMAN, MATTHEW J · 2009 to 2010
$428k
NIMH NIH HHS P50 MH113838NIMH NIH HHS R01 MH064783NIMH NIH HHS R01 MH097735NIMH NIH HHS R21 MH084031NIMH NIH HHS T32 MH019132
6 · The paper itself

Abstract

backgroundFunctional connectivity (FC) maps from brain fMRI data are often derived with seed-based methods that estimate temporal correlations between the time course in a predefined region (seed) and other brain regions (SCA, seed-based correlation analysis). Standard dual regression, which uses a set of spatial regressor maps, can detect FC with entire brain "networks," such as the default mode network, but may not be feasible when detecting FC associated with a single small brain region alone (for example, the amygdala). NEW

methodWe explored seed-based dual regression (SDR) from theoretical and practical points of view. SDR is a modified implementation of dual regression where the set of spatial regressors is replaced by a single binary spatial map of the seed region.

resultsSDR allowed detection of FC with small brain regions. COMPARISON WITH EXISTING

methodFor both synthetic and natural fMRI data, detection of FC with SDR was identical to that obtained with SCA after removal of global signal from fMRI data with global signal regression (GSR). In the absence of GSR, detection of FC was significantly improved when using SDR compared with SCA.

conclusionThe improved FC detection achieved with SDR was related to a partial filtering of the global signal that occurred during spatial regression, an integral part of dual regression. This filtering can sometimes lead to spurious negative correlations that result in a widespread negative bias in FC derived with any application of dual regression. We provide guidelines for how to identify and correct this potential problem.

Indexed as

Brain MappingMagnetic Resonance ImagingBrainDual regressionFMRIFunctional connectivityGlobal signal regressionSeed-based correlation analysisSeed-based dual regression

Identifiers

PMID34798212
PMCPMC8720564

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.