Evidence map›Paper›PMID 34798047›Full record

ArticleNeuron2022

Transcriptomic taxonomy and neurogenic trajectories of adult human, macaque, and pig hippocampal and entorhinal cells.

Daniel Franjic, Mario Skarica, Shaojie Ma, Jon I Arellano, Andrew T N Tebbenkamp, Jinmyung Choi, Chuan Xu, Qian Li, Yury M Morozov, David Andrijevic and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in Neuron, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 192 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
192citing papers in PubMed, 3 pooled it
26.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

192 citing papers in PubMed, 3 syntheses or guidelines pooled it, 298 citations in OpenAlex.

  1. Pooled it
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  4. Article
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  11. Isolation of postnatal human neural stem cells.bioRxiv : the preprint server for biology · 2026
    Article
  12. Article
  13. Article
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  15. Review
  16. Review
  17. Modern Mining: The Role of Single-cell RNA Sequencing in Advancing Neuroscience Research.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  18. Article
  19. Review
  20. Article

132 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors at 4 institutions in 2 countries.

Daniel FranjicDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Mario SkaricaDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Shaojie MaDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA; Department of Genetics, Yale School of Medicine, New Haven, CT 06510, USA.
Jon I ArellanoDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Andrew T N TebbenkampDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Jinmyung ChoiDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Chuan XuDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Qian LiDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Yury M MorozovDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
David AndrijevicDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Zvonimir VrseljaDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Ana SpajicDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Gabriel SantpereDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA; Neurogenomics Group, Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM), DCEXS, Universitat Pompeu Fabra, 08003 Barcelona, Catalonia, Spain.
Mingfeng LiDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Shupei ZhangDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Yang LiuDepartment of Biomedical Engineering, Yale Stem Cell Center and Yale Cancer Center, and Human and Translational Immunology Program, Yale University, New Haven, CT 06520, USA.
Joshua SpurrierProgram in Cellular Neuroscience, Neurodegeneration and Repair, Departments of Neurology and of Neuroscience, Yale School of Medicine, New Haven, CT 06536, USA.
Le ZhangProgram in Cellular Neuroscience, Neurodegeneration and Repair, Departments of Neurology and of Neuroscience, Yale School of Medicine, New Haven, CT 06536, USA.
Ivan GudeljDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Lucija RapanDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Hideyuki TakahashiProgram in Cellular Neuroscience, Neurodegeneration and Repair, Departments of Neurology and of Neuroscience, Yale School of Medicine, New Haven, CT 06536, USA.
Anita HuttnerDepartment of Pathology, Brady Memorial Laboratory, Yale School of Medicine, New Haven, CT 06510, USA.
Rong FanDepartment of Biomedical Engineering, Yale Stem Cell Center and Yale Cancer Center, and Human and Translational Immunology Program, Yale University, New Haven, CT 06520, USA.
Stephen M StrittmatterProgram in Cellular Neuroscience, Neurodegeneration and Repair, Departments of Neurology and of Neuroscience, Yale School of Medicine, New Haven, CT 06536, USA.
Andre M M SousaDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA; Waisman Center and Department of Neuroscience, School of Medicine and Public Health, University of Wisconsin-Madison, Madison, WI 53705, USA.
Pasko RakicDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA; Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA.
Nenad SestanDepartment of Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA; Department of Genetics, Yale School of Medicine, New Haven, CT 06510, USA; Kavli Institute for Neuroscience, Yale School of Medicine, New Haven, CT 06510, USA; Departments of Psychiatry and Comparative Medicine, Program in Cellular Neuroscience, Neurodegeneration and Repair, and Yale Child Study Center, Yale School of Medicine, New Haven, CT 06510, USA. Electronic address: nenad.sestan@yale.edu.
Yale University · USYale Cancer Center · USUniversitat Pompeu Fabra · ESUniversity of Wisconsin–Madison · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale Alzheimer Disease Research CenterP30AG066508 · NIA · YALE UNIVERSITY · PI STEPHEN M STRITTMATTER, CHRISTOPHER H VAN DYCK · 2020 to 2026
$30.2M
Prion Protein in Alzheimer's Disease PathophysiologyR01AG034924 · NIA · YALE UNIVERSITY · PI STEPHEN M STRITTMATTER · 2010 to 2026
$9.6M
Genome-Wide Discovery and Translational Research for Neural RepairR35NS097283 · NINDS · YALE UNIVERSITY · PI STRITTMATTER, STEPHEN M · 2017 to 2024
$8.1M
Origin of Cortical Species-specific Distinctions.R01DA023999 · NIDA · YALE UNIVERSITY · PI RAKIC, PASKO · 2008 to 2019
$7.9M
1/2 Cell Type and Region-Specific Regulatory Networks in Human Brain Development and DisordersU01MH116488 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2018 to 2022
$6.5M
Origin of Cortical Species-specific DistinctionsR37DA023999 · NIDA · YALE UNIVERSITY · PI PASKO RAKIC · 2020 to 2026
$5.6M
Molecular Diversity Among Hippocampal and Entorhinal Cells in Aging and Alzheimer's DiseaseRF1AG074341 · NIA · YALE UNIVERSITY · PI HUTTNER, ANITA JULIANE, SESTAN, NENAD · 2021 to 2021
$4.9M
Yale Macaque Brain ResourceR01MH113257 · NIMH · YALE UNIVERSITY · PI Alvaro Duque · 2017 to 2026
$4.3M
Heterogeneity of Forebrain Neural PrecursorsR01NS095654 · NINDS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI HAYDAR, TARIK F, SESTAN, NENAD · 2015 to 2019
$3.4M
Developmental cell census of human and non-human primate brainU01MH124619 · NIMH · YALE UNIVERSITY · PI SESTAN, NENAD · 2020 to 2022
$3.3M
Sex-Specific Single Cell Expression Profiles, Genetic Risk and Drug Responsiveness in Alzheimer's DiseaseR56AG074015 · NIA · YALE UNIVERSITY · PI GHOSH, SOURAV, ROTHLIN, CARLA · 2021 to 2022
$2.5M
NCATS NIH HHS UL1 TR001863NIA NIH HHS P30 AG066508NIA NIH HHS R01 AG034924NIA NIH HHS RF1 AG074341NIDA NIH HHS R01 DA023999NIDA NIH HHS R37 DA023999NIMH NIH HHS R01 MH113257NIMH NIH HHS U01 MH116488NIMH NIH HHS U01 MH124619NINDS NIH HHS R01 NS095654NINDS NIH HHS R35 NS097283
6 · The paper itself

Abstract

The hippocampal-entorhinal system supports cognitive functions, has lifelong neurogenic capabilities in many species, and is selectively vulnerable to Alzheimer's disease. To investigate neurogenic potential and cellular diversity, we profiled single-nucleus transcriptomes in five hippocampal-entorhinal subregions in humans, macaques, and pigs. Integrated cross-species analysis revealed robust transcriptomic and histologic signatures of neurogenesis in the adult mouse, pig, and macaque but not humans. Doublecortin (DCX), a widely accepted marker of newly generated granule cells, was detected in diverse human neurons, but it did not define immature neuron populations. To explore species differences in cellular diversity and implications for disease, we characterized subregion-specific, transcriptomically defined cell types and transitional changes from the three-layered archicortex to the six-layered neocortex. Notably, METTL7B defined subregion-specific excitatory neurons and astrocytes in primates, associated with endoplasmic reticulum and lipid droplet proteins, including Alzheimer's disease-related proteins. This resource reveals cell-type- and species-specific properties shaping hippocampal-entorhinal neurogenesis and function.

Indexed as

MacacaTranscriptomeAnimalsDoublecortin ProteinHippocampusHumansMiceNeurogenesisSwineDoublecortin Proteinadult neurogenesisAlzheimer’s diseasedoublecortinentorhinal cortexevolutionhippocampusimmature neuronsMETTL7Bneuroblastsingle-cell RNA-seq

Identifiers

PMID34798047
PMCPMC8813897
OpenAlexW3212895337

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.