Evidence map›Paper›PMID 34797893›Full record

ArticlePloS one2021

Genetic variations of CYP2R1 (rs10741657) in Bangladeshi adults with low serum 25(OH)D level-A pilot study.

Kazi Lutfar Rahman, Qazi Shamima Akhter, Md Sayedur Rahman, Ridwana Rahman, Samina Rahman Sami, Farzana Yeasmin Mukta, Sudipta Sarker

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kazi Lutfar RahmanCovid Dedicated RT-PCR Lab, Kurmitola General Hospital, Dhaka, Bangladesh.ORCID 0000-0002-6936-8749
Qazi Shamima AkhterDepartment of Physiology, Dhaka Medical College and Hospital, Dhaka, Bangladesh.ORCID 0000-0002-7589-899X
Md Sayedur RahmanDepartment of Pharmacology, Bangabandhu Sheikh Mujib Medical University, Dhaka, Bangladesh.
Ridwana RahmanDepartment of Physiology, Dhaka Medical College and Hospital, Dhaka, Bangladesh.
Samina Rahman SamiDepartment of Orthopedics, United Hospital Limited, Dhaka, Bangladesh.ORCID 0000-0002-9727-538X
Farzana Yeasmin MuktaDepartment of Cardiology, Kurmitola General Hospital, Dhaka, Bangladesh.
Sudipta SarkerCharbaria Union Health and Family Welfare Centre, Barishal Sadar, Barishal, Bangladesh.
Bangladesh Medical University · BDDhaka Medical College and Hospital · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSome studies revealed that despite having sufficient sun exposure and dietary supply, the level of serum 25(OH)D in Bangladeshi adults is lower than its normal range. Genetic pattern of an individual is also an essential factor that regulates the level of serum 25(OH)D. However, the genetic variations of CYP2R1 (rs10741657) and their association with low serum 25(OH)D level in Bangladeshi adults are yet to be explored.

objectiveThis study was conducted to determine the frequency of variants of rs10741657 of CYP2R1 gene and its association with low serum 25(OH)D level among Bangladeshi adults.

methodThis pilot study was conducted among thirty individuals with low serum 25(OH)D level as the study population and ten subjects with sufficient serum 25(OH)D level as controls based on the inclusion and exclusion criteria. Genetic analysis of rs10741657 of CYP2R1 including primer designing, DNA extraction, PCR of target region with purification and Sanger sequencing of the PCR products were done accordingly. For statistical analysis, One-way ANOVA followed by LSD test, Freeman-Halton extension of Fisher's exact test, Chi-square test (χ2) test and unpaired student t-test were performed.

resultsIn this study, genetic variants of CYP2R1 (rs10741657) among the study population were genotype GG (63.30%), GA (30%) and AA (6.7%). Minor allele frequency of the study population was 0.217. The association between GG and GA genotypes of CYP2R1 (rs10741657) with low serum 25(OH)D level among the study population was found and it was statistically significant. Statistically significant differences were also observed between the genotypes and alleles of the study population and controls.

conclusionsThe presence of 'GG' and 'GA' genotypes of rs1041657 in CYP2R1 gene is associated with low serum 25(OH)D level among Bangladeshi adults in this pilot study.

Indexed as

AdultAllelesAsian PeopleChi-Square DistributionCholestanetriol 26-MonooxygenaseCytochrome P450 Family 2FemaleGene FrequencyGenetic TestingGenetic VariationGenotypeHumansMalePilot ProjectsPolymerase Chain ReactionVitamin D25-hydroxyvitamin DCholestanetriol 26-MonooxygenaseCYP2R1 protein, humanCytochrome P450 Family 2Vitamin D

Identifiers

PMID34797893
PMCPMC8604301
OpenAlexW3213790047

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.